View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2241_low_2 (Length: 561)

Name: NF2241_low_2
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2241_low_2
NF2241_low_2
[»] chr4 (12 HSPs)
chr4 (20-540)||(48701837-48702357)
chr4 (20-542)||(48697147-48697670)
chr4 (20-540)||(30945493-30946030)
chr4 (20-542)||(30950199-30950738)
chr4 (20-341)||(42265883-42266204)
chr4 (20-341)||(42270602-42270923)
chr4 (20-342)||(24520041-24520363)
chr4 (20-295)||(10427315-10427581)
chr4 (22-212)||(48782850-48783026)
chr4 (128-256)||(1979253-1979375)
chr4 (57-155)||(17248015-17248112)
chr4 (70-108)||(1979567-1979604)
[»] chr2 (17 HSPs)
chr2 (20-541)||(5198671-5199192)
chr2 (23-293)||(15602905-15603175)
chr2 (20-167)||(825632-825780)
chr2 (20-167)||(830288-830436)
chr2 (20-271)||(28715816-28716061)
chr2 (22-295)||(30396929-30397191)
chr2 (217-297)||(830209-830291)
chr2 (217-297)||(825553-825635)
chr2 (73-224)||(13843865-13844014)
chr2 (20-164)||(31592926-31593068)
chr2 (99-226)||(8004167-8004292)
chr2 (451-522)||(34614229-34614301)
chr2 (20-226)||(13840256-13840456)
chr2 (24-139)||(12175768-12175881)
chr2 (345-415)||(28715678-28715747)
chr2 (65-174)||(42117769-42117876)
chr2 (24-68)||(9358163-9358207)
[»] chr6 (12 HSPs)
chr6 (20-540)||(27878725-27879263)
chr6 (20-343)||(26976147-26976470)
chr6 (20-342)||(1234680-1235002)
chr6 (20-341)||(27874006-27874327)
chr6 (20-295)||(18967912-18968178)
chr6 (20-279)||(30986552-30986813)
chr6 (50-292)||(30966683-30966923)
chr6 (28-195)||(21966677-21966841)
chr6 (23-172)||(23012520-23012667)
chr6 (362-410)||(30986430-30986478)
chr6 (362-401)||(30966566-30966605)
chr6 (20-55)||(30967674-30967709)
[»] chr5 (5 HSPs)
chr5 (20-540)||(29585316-29585826)
chr5 (20-374)||(41718357-41718711)
chr5 (20-374)||(41723083-41723437)
chr5 (23-343)||(34352226-34352546)
chr5 (20-343)||(34359934-34360257)
[»] chr3 (10 HSPs)
chr3 (20-540)||(2817279-2817788)
chr3 (20-342)||(5823291-5823613)
chr3 (20-343)||(5818529-5818852)
chr3 (20-297)||(54545906-54546184)
chr3 (23-157)||(24659155-24659287)
chr3 (20-118)||(4579254-4579352)
chr3 (20-190)||(31204783-31204950)
chr3 (157-295)||(24671173-24671301)
chr3 (42-199)||(35977103-35977258)
chr3 (170-295)||(4579126-4579241)
[»] chr8 (3 HSPs)
chr8 (20-342)||(9439388-9439710)
chr8 (20-342)||(9444108-9444430)
chr8 (21-77)||(4799315-4799371)
[»] chr7 (7 HSPs)
chr7 (20-295)||(16183647-16183913)
chr7 (22-296)||(30235043-30235321)
chr7 (20-226)||(8139980-8140183)
chr7 (22-190)||(8138478-8138645)
chr7 (20-162)||(5102609-5102749)
chr7 (361-415)||(30234920-30234974)
chr7 (34-119)||(36528445-36528529)
[»] scaffold0074 (1 HSPs)
scaffold0074 (20-295)||(27242-27508)
[»] chr1 (4 HSPs)
chr1 (20-295)||(46191266-46191530)
chr1 (20-190)||(30697131-30697300)
chr1 (20-190)||(4130215-4130385)
chr1 (146-226)||(30674787-30674865)


Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 48701837 - 48702357
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701837 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 48701936  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  48701937 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg 48702036  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48702037 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 48702136  T
Q  320 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcagcgt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48702137 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgt 48702236  T
Q  420 gtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctt 519  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702237 gtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctt 48702336  T
Q  520 taccactttcctgtgttcaca 540  Q
    |||||||||||||||||||||    
T  48702337 taccactttcctgtgttcaca 48702357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Original strand, 48697147 - 48697670
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa-aa 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48697147 aacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaa 48697246  T
Q  119 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  48697247 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 48697346  T
Q  219 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttc 318  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48697347 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 48697446  T
Q  319 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcagcg 418  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  48697447 ttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagca 48697546  T
Q  419 tgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggct 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697547 tgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggct 48697646  T
Q  519 ttaccactttcctgtgttcacaat 542  Q
    ||||||||||||||||||||||||    
T  48697647 ttaccactttcctgtgttcacaat 48697670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 30945493 - 30946030
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  30945493 aacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaat 30945591  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945592 cacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 30945691  T
Q  220 agaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tcta-----aacaa------ 305  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |||||          
T  30945692 agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagtt 30945791  T
Q  306 ---gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaa 401  Q
       |  |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30945792 gttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaa 30945891  T
Q  402 ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca 501  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945892 ttgcatttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca 30945991  T
Q  502 cttcaacaaaagtggctttaccactttcctgtgttcaca 540  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30945992 cttcaacaaaagtggctttaccactttcctgtgttcaca 30946030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Original strand, 30950199 - 30950738
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30950199 aacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaac 30950297  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30950298 cacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaatagg 30950397  T
Q  220 agaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tcta-----aacaa------ 305  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |||||          
T  30950398 agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagtt 30950497  T
Q  306 ---gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaa 401  Q
       |  |||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30950498 gttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaa 30950597  T
Q  402 ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950598 ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca 30950697  T
Q  502 cttcaacaaaagtggctttaccactttcctgtgttcacaat 542  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30950698 cttcaacaaaagtggctttaccactttcctgtgttcacaat 30950738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 42266204 - 42265883
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266204 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 42266105  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266104 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 42266005  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42266004 agaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 42265905  T
Q  320 tgtgttgttactgatttgggat 341  Q
    ||||||||||||||||||||||    
T  42265904 tgtgttgttactgatttgggat 42265883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 42270923 - 42270602
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270923 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 42270824  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270823 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 42270724  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42270723 agaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 42270624  T
Q  320 tgtgttgttactgatttgggat 341  Q
    ||||||||||||||||||||||    
T  42270623 tgtgttgttactgatttgggat 42270602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 24520041 - 24520363
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520041 aacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 24520140  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24520141 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg 24520240  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24520241 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 24520340  T
Q  320 tgtgttgttactgatttgggatg 342  Q
    |||||||||||||||||||||||    
T  24520341 tgtgttgttactgatttgggatg 24520363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 10427581 - 10427315
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10427581 aacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaataaggggaaaaaac 10427482  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 218  Q
     |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  ||||||    
T  10427481 tacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaatag 10427384  T
Q  219 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 295  Q
    |||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  10427383 gagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 10427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 48783026 - 48782850
Alignment:
Q  22 caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 121  Q
    ||||||||||||||||   |||||||||| ||||||||| |||||||||||||||||||||| |||||||||   |||||||||||| ||||||||  ||    
T  48783026 caaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaagggaaaaa--ca 48782930  T
Q  122 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 212  Q
     ||||         ||||||||||||||||||||||||||| | |||||||||||||||||| |  |||||||||||||||||||||||||    
T  48782929 tgggg---------agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
Q  128 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 227  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  |||| ||||||| ||| | |||||||||||||||||||| ||||||||       
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- 1979281  T
Q  228 aactaacacaaactaggagaaacctcaca 256  Q
     |||| ||| ||| |||||||||||||||    
T  1979280 -actagcactaaccaggagaaacctcaca 1979253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
Q  57 aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa 155  Q
    ||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| ||  ||||||| |||||||||| |||||||||    
T  17248112 aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa 17248015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  70 aacacacaatattttacgtggaaacccctcaacaaataa 108  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 20 - 541
Target Start/End: Original strand, 5198671 - 5199192
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198671 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 5198770  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  5198771 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg 5198870  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5198871 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 5198970  T
Q  320 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcagcgt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5198971 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgt 5199070  T
Q  420 gtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctt 519  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199071 gtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctt 5199170  T
Q  520 taccactttcctgtgttcacaa 541  Q
    |||||||||||| |||||||||    
T  5199171 taccactttcctatgttcacaa 5199192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 15603175 - 15602905
Alignment:
Q  23 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 122  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603175 aaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 15603076  T
Q  123 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga 222  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| |||||||||||    
T  15603075 ggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggaga 15602976  T
Q  223 atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca 293  Q
    |||| |||||||||  |||| ||||||||||| || | || ||||||||||| ||||||||||| ||||||    
T  15602975 atactaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca 15602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 825780 - 825632
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  825780 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaaa 825681  T
Q  119 ccacggggcaagagtagagaactttcactaagtggaagaaattacagga 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  825680 ccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 830436 - 830288
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaa 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  830436 aacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaa 830337  T
Q  119 ccacggggcaagagtagagaactttcactaagtggaagaaattacagga 167  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830336 ccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 28716061 - 28715816
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||||||| |    
T  28716061 aacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataaggggaaaaa-c 28715964  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    |||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  | || ||||||||||    
T  28715963 cacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataaatagg 28715864  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt 271  Q
    |||||    |||||||| | ||||||||||||| ||| ||||||||| ||||    
T  28715863 agaat----actaacactacctaggagaaaccttacaagagaaactattttt 28715816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 30396929 - 30397191
Alignment:
Q  22 caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 121  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||| ||    
T  30396929 caaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataagggaaaaaaatca 30397026  T
Q  122 cggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagga 220  Q
    | |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||   ||||||| |||| | ||  ||||||||    
T  30397027 cagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt-gaaatagga 30397124  T
Q  221 gaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 295  Q
    |||||  |||        ||||||||||| ||||||||||||||||  ||| ||||||||||| || ||||||||    
T  30397125 gaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact 30397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 830291 - 830209
Alignment:
Q  217 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat 297  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 830209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 825635 - 825553
Alignment:
Q  217 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat 297  Q
    ||||||||||||||  |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactat 825553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 13843865 - 13844014
Alignment:
Q  73 acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 172  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||   |  ||  || |||| |||| ||||| ||||||||||||||||||||||| ||    
T  13843865 acacaatattt-acgtggaaacccctcaacaaataaggagaaaaatt-ataggttaaaagtatagaattttcattaagtggaagaaattacaggacccct 13843962  T
Q  173 ctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 224  Q
     | |||||||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843963 ttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 31592926 - 31593068
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |||||| |  |||||||    
T  31592926 aacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataa-gaaaaaaaac 31593024  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattaca 164  Q
    |||  |  ||||||||||||||||||||||  | |||||||||||    
T  31593025 cac-agataagagtagagaactttcactaaccgaaagaaattaca 31593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
Q  99 caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| ||||||||||||    
T  8004292 caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta 8004194  T
Q  199 ccactctctcttataaataggagaatac 226  Q
     |||||||||||||||||||||||||||    
T  8004193 -cactctctcttataaataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 451 - 522
Target Start/End: Original strand, 34614229 - 34614301
Alignment:
Q  451 atgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaa-gtggctttac 522  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  34614229 atgtaaacatagaaattacatgctaacatgttttactgccatgtgacaacaattcaacaaaaggtggctttac 34614301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 13840256 - 13840456
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||  |||||| || ||  ||  |||||||||| |||||| ||||      
T  13840256 aacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaacaaacaagggggaaaa-- 13840350  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    || || ||||||||||| || ||| || ||||  || ||||||||  ||||||||||||||| ||||||||||||||||| | ||||||||| |||||      
T  13840351 catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaattctctcttaaaaataaa 13840449  T
Q  220 agaatac 226  Q
    |||||||    
T  13840450 agaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
Q  24 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 123  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| ||||||  ||||||||| |      
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt 12175865  T
Q  124 gggcaagagtagagaa 139  Q
    || |||||||||||||    
T  12175866 ggacaagagtagagaa 12175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 415
Target Start/End: Complemental strand, 28715747 - 28715678
Alignment:
Q  345 tagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggca 415  Q
    |||||||||||||| | |||||||||||||  |||||||||  ||||||||||||| || |||||||||||    
T  28715747 tagaatggtgcaagag-catgctatttataggagtgaaagaaccatgccccaaccatttacatttatggca 28715678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
Q  65 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 164  Q
    ||||||||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||| | ||| |||||| |||||||| |||  |  |||||||| |    
T  42117876 aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata 42117779  T
Q  165 ggacctctct 174  Q
     |||||||||    
T  42117778 agacctctct 42117769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 9358163 - 9358207
Alignment:
Q  24 aaatattatcacgcagctaaaataagagacgagaaaagaggaact 68  Q
    ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358163 aaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 27878725 - 27879263
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878725 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 27878824  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878825 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 27878924  T
Q  220 agaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tcta-----aacaa------ 305  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |||||          
T  27878925 agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagtt 27879024  T
Q  306 ---gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaa 401  Q
       |  |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27879025 gttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaa 27879124  T
Q  402 ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27879125 ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca 27879224  T
Q  502 cttcaacaaaagtggctttaccactttcctgtgttcaca 540  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  27879225 cttcaacaaaagtggctttaccactttcctgtgtccaca 27879263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 26976147 - 26976470
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976147 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 26976246  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26976247 caaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg 26976346  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26976347 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 26976446  T
Q  320 tgtgttgttactgatttgggatga 343  Q
    ||||||||||||||||||||||||    
T  26976447 tgtgttgttactgatttgggatga 26976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 1235002 - 1234680
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235002 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 1234903  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  1234902 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg 1234803  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1234802 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 1234703  T
Q  320 tgtgttgttactgatttgggatg 342  Q
    |||||||||||||||||||||||    
T  1234702 tgtgttgttactgatttgggatg 1234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 27874006 - 27874327
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27874006 aacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggaaaaaac 27874105  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874106 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 27874205  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27874206 agaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 27874305  T
Q  320 tgtgttgttactgatttgggat 341  Q
    ||||||||||||||||||||||    
T  27874306 tgtgttgttactgatttgggat 27874327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 18968178 - 18967912
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  18968178 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaataaggggaaaaaac 18968079  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 218  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||| | ||||||| |  ||||||    
T  18968078 cacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctctctcat-gaaatag 18967981  T
Q  219 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 295  Q
    |||||||| |||        |||||||||||||||||| |||||||||  ||| |||| ||||||||| ||||||||    
T  18967980 gagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact 18967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 30986813 - 30986552
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctcaacaaataaggggaaaa 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   |||||||||||||||||  ||||    
T  30986813 aacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctcaacaaataaggaaaaaa 30986715  T
Q  117 aa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataa 214  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  30986714 aaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctcttgtaa 30986615  T
Q  215 ataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta 279  Q
    |||| |||||    ||| |||| | |||||||||||||||  ||||||||||| || ||||||||||    
T  30986614 atagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta 30986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 30966923 - 30966683
Alignment:
Q  50 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta 148  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
Q  149 agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaa 248  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    ||| |  | | |||||||||    
T  30966824 agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa 30966729  T
Q  249 acctcac-aggagaaactaatt-tttctctctatattttttctctc 292  Q
    ||||||| || |||||||| || |||||||||||||||||||||||    
T  30966728 acctcacaagtagaaactatttctttctctctatattttttctctc 30966683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 21966841 - 21966677
Alignment:
Q  28 attatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggc 127  Q
    ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |||||||| | | |||||    
T  21966841 attatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataaagggaaaaatc-atggggc 21966745  T
Q  128 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    |||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966744 aagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
Q  23 aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 121  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| ||||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaaaacca 23012617  T
Q  122 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 172  Q
      |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012618 -tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 30986478 - 30986430
Alignment:
Q  362 catgctatttatactagtgaaagagtcatgccccaaccaattgcattta 410  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  30986478 catgctatttatattagtgaaagagccatgccccaaccaattacattta 30986430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 30966605 - 30966566
Alignment:
Q  362 catgctatttatactagtgaaagagtcatgccccaaccaa 401  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  30966605 catgctatttatactagtgaaagagccatgccccaaccaa 30966566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 30967709 - 30967674
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacga 55  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30967709 aacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 29585316 - 29585826
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585316 aacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 29585415  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  29585416 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctctcttataaatagg 29585515  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaagctttacttgttc 318  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||     
T  29585516 agaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctagacaagctttacttgttg 29585615  T
Q  319 ttgtgttgttactgatttgggatgagtagaatggtgcaa-gggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcagc 417  Q
    |||||||||||||||||||||||||   |  |||  ||| || |||          | ||||||||||| ||||||||||||||||||||||||||||||    
T  29585616 ttgtgttgttactgatttgggatga--tgtgtggaacaatggtaca----------aatagtgaaagagccatgccccaaccaattgcatttatggcagc 29585703  T
Q  418 gtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggc 517  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29585704 gtgtgaattttcaactttgcatagtaactttccatgtgaacataaaaactacatgccaacatgttttactgccatgtgataacaattcaacaaaagtggc 29585803  T
Q  518 tttaccactttcctgtgttcaca 540  Q
    |||||||||||||||||||||||    
T  29585804 tttaccactttcctgtgttcaca 29585826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 41718711 - 41718357
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718711 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 41718612  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  41718611 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg 41718512  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41718511 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 41718412  T
Q  320 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718411 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata 41718357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 41723437 - 41723083
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723437 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 41723338  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  41723337 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg 41723238  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41723237 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 41723138  T
Q  320 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723137 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata 41723083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 23 - 343
Target Start/End: Complemental strand, 34352546 - 34352226
Alignment:
Q  23 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  123 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34352446 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga 34352347  T
Q  223 atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgt 322  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352346 atactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgt 34352247  T
Q  323 gttgttactgatttgggatga 343  Q
    |||||||||||||||||||||    
T  34352246 gttgttactgatttgggatga 34352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 34360257 - 34359934
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34360257 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaataaggggaaaaaac 34360158  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34360157 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg 34360058  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360057 agaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 34359958  T
Q  320 tgtgttgttactgatttgggatga 343  Q
    ||||||||||||||||||||||||    
T  34359957 tgtgttgttactgatttgggatga 34359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 2817279 - 2817788
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2817279 aacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaac 2817377  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct--tataaata 217  Q
    ||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  2817378 cacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaata 2817477  T
Q  218 ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatc-taaacaagctttacttgt 316  Q
    ||||||||| |||||| ||||||||||||||||              || |||| ||||||||||||||||||||| || | |||||||| |||||||||    
T  2817478 ggagaatactaactaatacaaactaggagaaac--------------tatttttcctctctatattttttctctcattaccctaaacaagttttacttgt 2817563  T
Q  317 tcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcag 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  2817564 tcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaattgcatttatggcag 2817663  T
Q  417 cgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtgg 516  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  2817664 cgtgtgaattttcaactttgcatagtaacttcccatgtgaacatagaaattacatgccaacatattttactgccatgtgataacaattcaacaaaagtgg 2817763  T
Q  517 cttta-ccactttcctgtgttcaca 540  Q
    |||||  ||||||||||||||||||    
T  2817764 ctttatgcactttcctgtgttcaca 2817788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 5823291 - 5823613
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823291 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 5823390  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5823391 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg 5823490  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5823491 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 5823590  T
Q  320 tgtgttgttactgatttgggatg 342  Q
    |||||||||||||||||||||||    
T  5823591 tgtgttgttactgatttgggatg 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 5818529 - 5818852
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5818529 aacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaataaggggaaaaaac 5818628  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5818629 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg 5818728  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5818729 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 5818828  T
Q  320 tgtgttgttactgatttgggatga 343  Q
    ||||||||||||||||||||||||    
T  5818829 tgtgttgttactgatttgggatga 5818852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 54546184 - 54545906
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  54546184 aacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaacaaataaggggaaaaaac 54546086  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54546085 cacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg 54545986  T
Q  220 agaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat 297  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54545985 agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 54545906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 24659155 - 24659287
Alignment:
Q  23 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 122  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24659155 aaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaataaggggaaaaaaccac 24659254  T
Q  123 ggggcaagagtagagaactttcactaagtggaaga 157  Q
    |||||||||||  ||||||||||||||||||||||    
T  24659255 ggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 4579352 - 4579254
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579352 aacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 31204783 - 31204950
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||     
T  31204783 aacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaaat 31204880  T
Q  120 cacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 190  Q
    ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204881 cacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 295
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
Q  157 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca 256  Q
    |||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca 24671262  T
Q  257 ggagaaactaatttttctctctatattttttctctcact 295  Q
    ||||||||||  ||| |||||||||||||| ||||||||    
T  24671263 ggagaaactatatttcctctctatatttttcctctcact 24671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
Q  42 aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac 140  Q
    ||||||||||  |||||||||| || |||||| ||||||||| ||||  ||| || |||||| |||  ||||||||  |||  |||||||||| | ||      
T  35977258 aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt 35977162  T
Q  141 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 199  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
Q  170 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 269  Q
    |||||||||||||||||||||   ||||||| ||||||| |  |||||||||||||| ||||        ||| |||||||||||||||||||||||  |    
T  4579241 tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat 4579152  T
Q  270 tttctctctatattttttctctcact 295  Q
    || |||||||||||||| ||||||||    
T  4579151 ttcctctctatatttttcctctcact 4579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 9439388 - 9439710
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439388 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 9439487  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  9439488 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg 9439587  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9439588 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 9439687  T
Q  320 tgtgttgttactgatttgggatg 342  Q
    |||||||||||||||||||||||    
T  9439688 tgtgttgttactgatttgggatg 9439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 9444108 - 9444430
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444108 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 9444207  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  9444208 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg 9444307  T
Q  220 agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9444308 agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct 9444407  T
Q  320 tgtgttgttactgatttgggatg 342  Q
    |||||||||||||||||||||||    
T  9444408 tgtgttgttactgatttgggatg 9444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  21 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 77  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 16183647 - 16183913
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183647 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 16183746  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||   ||||||| |||||||||  ||||||    
T  16183747 cacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctctctt-gaaatag 16183844  T
Q  219 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 295  Q
    |||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  16183845 gagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 16183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 30235321 - 30235043
Alignment:
Q  22 caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa-cc 120  Q
    ||||||||||| || |||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||    
T  30235321 caaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacgaataaggggaaaaaaacc 30235223  T
Q  121 acggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    |||||  ||||||||| |||||||| ||| | ||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||||||||||||    
T  30235222 acgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctctcttataaatagg 30235123  T
Q  220 agaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcacta 296  Q
    |||||||||  |||||||| |  || |||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  30235122 agaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcacta 30235043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 8139980 - 8140183
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| |||||    
T  8139980 aacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaatattt-atgtggaaacccctcaacaaataaggggagaaaac 8140078  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 219  Q
    || |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||   ||||||| |||||||||  |||||||    
T  8140079 catggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctctctctt-gaaatagg 8140176  T
Q  220 agaatac 226  Q
    |||||||    
T  8140177 agaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 8138478 - 8138645
Alignment:
Q  22 caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 121  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| || || | |||||||||||| |||||| ||||||| |||||||    
T  8138478 caaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaaacaaggggagaaaacca 8138576  T
Q  122 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 190  Q
    || ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8138577 cgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 5102609 - 5102749
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 118  Q
    |||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| ||||||||||||||||||||     
T  5102609 aacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaaaa- 5102705  T
Q  119 ccacggggcaagagtagagaactttcactaagtggaagaaatta 162  Q
    ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102706 ccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 30234974 - 30234920
Alignment:
Q  361 acatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggca 415  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  30234974 acatgctatttatactagtgaaagagccatgccccaaccaattacatttatggca 30234920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 36528445 - 36528529
Alignment:
Q  34 acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || |||||||  |||||||    
T  36528445 acgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacgaataaggaaaaaaaac 36528529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 27242 - 27508
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27242 aacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaataaggggaaaaaac 27341  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||   |||||||| ||||||||  ||||||    
T  27342 cacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca-tctctctt-gaaatag 27439  T
Q  219 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 295  Q
    | |||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  27440 gtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 46191530 - 46191266
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  46191530 aacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaacaaataaggggaaaaaac 46191433  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 218  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||   ||||||| |||||||||  ||||||    
T  46191432 cacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctctctctt-gaaatag 46191335  T
Q  219 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 295  Q
    |||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  46191334 gagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 46191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 30697131 - 30697300
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |    
T  30697131 aacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataaggggaaaaagc 30697229  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 190  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697230 cacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 4130385 - 4130215
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||    
T  4130385 aacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaacaaataaagggaaaaaac 4130287  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  4130286 cacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
Q  146 ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 226  Q
    ||||||||||||||||| |  ||||||| ||||| | |||||||| ||||||| || |||||||| | |||||||||||||    
T  30674787 ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac 30674865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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