View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2241_low_20 (Length: 240)
Name: NF2241_low_20
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 27639895 - 27639680
Alignment:
| Q |
19 |
gaagtaattatgaaattatcaaaaagaaagcacaagnnnnnnnnnnncttctacagaaatgcacaatttattgtaaagttaaattaattttagagtttgt |
118 |
Q |
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| T |
27639895 |
gaagtaattatgaaattatcaaaaagaaagcacaagtttttt------ttctacagaaatgcacaatttattgcaaagttaaattaattttagagtttga |
27639802 |
T |
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| Q |
119 |
atttgaagaatgataaccaattggattgaaaagtttgagtgtaacggaactctttagaaaatgattttatgtgtatttaagtaattaatttgtttaaaat |
218 |
Q |
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| T |
27639801 |
atttgaagaatgataaccaattggattgaaaagtttgagtgtaacggaactctttagaaaatgattttatgtgtatttaagtaattaatttgtttaaaat |
27639702 |
T |
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| Q |
219 |
actaattattattgactttctt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
27639701 |
actaattattattgactttctt |
27639680 |
T |
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