View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2241_low_22 (Length: 238)
Name: NF2241_low_22
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43426338 - 43426556
Alignment:
| Q |
1 |
caaatcccatctaaaccaaactgcacaatttggattgatttaggcaacatgttcactcgaaatcgaaacaaatcggtcactgaacacttatactcttcct |
100 |
Q |
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| T |
43426338 |
caaatcccatccaaaccaaactgcacactttggatcgatttaggcaacatgttcactcgaaatcgaaacaaatcggtcactgaacacttatactcttgct |
43426437 |
T |
|
| Q |
101 |
acgttccctctctattttcactatgtataatgaaacagtaagtgattttgccaagtgaaattgtagttcgtttagcaagttgctctttcttcaccttcaa |
200 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
43426438 |
acgttccctctctattttcac--tgtataatggaacagtaagtgattttgccaagtgaaattgtagttcgcttagcaagttgctctttcttcaccttgaa |
43426535 |
T |
|
| Q |
201 |
gtaattcctatttgtactcaa |
221 |
Q |
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|||||||||| |||||||||| |
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| T |
43426536 |
gtaattcctagttgtactcaa |
43426556 |
T |
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