View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2241_low_4 (Length: 418)
Name: NF2241_low_4
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 38959401 - 38959007
Alignment:
| Q |
17 |
tgataaagatgaggtttaatttaatggggttagggaatgtaatggcgggatatataaccaatgttggtgaatatttctggacgcatacttcttatctttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38959401 |
tgataaagatgaggtttaatttaatggggttagggaatgtaatggcgggatatataaccaatgttggtgaatatttctggacgcatacttcttatctttt |
38959302 |
T |
|
| Q |
117 |
cacaacctcttgttatcttccacgttggacccatcttaagatattatttttattactttctaattatttcaagagaaatttcatttttgttagaaacctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38959301 |
cacaacctcttgttatcttccacgttggacccatcttaagatattatttttattactttctaattatttcaagagaaatttcatttttgttagaaacctt |
38959202 |
T |
|
| Q |
217 |
tctagctcacttgaatttagtcatgcaaatattcttgtatattttgtatcattag-ttaatagtcataataaaaccttgatattttggtagtcttaaaga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38959201 |
tctagctcacttgaatttagtcatgcaaatattcttgtatattttgtatcattagtttaatagtcataataaaatcttgatattttggtagtcttaaaga |
38959102 |
T |
|
| Q |
316 |
aaaatgtttgtttggaagtgaaaatatcagccgtctatcaatacggtctcttattttagccaaccagatgttctgatatttgccatagaataata |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38959101 |
aaaatgtttgtttggaagtgaaaatatcagccgtctattaatacggtctcttattttagccaaccagatgttctgatatttgtcatagaataata |
38959007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University