View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2241_low_6 (Length: 350)
Name: NF2241_low_6
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_low_6 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr3 (7 HSPs) |
| |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 27878296 - 27878645
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878296 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
27878395 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27878396 |
tccacttttcatcagtgatatctgcaggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaa |
27878495 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878496 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
27878595 |
T |
|
| Q |
301 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878596 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
27878645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 30968139 - 30967789
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968139 |
tcccagatctcctttaatgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
30968040 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30968039 |
tccgcttttcaacagtgatatctgcaggtctgccatctattgtgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccacagggaaaa |
30967940 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| | |
|
|
| T |
30967939 |
atttctcccgttgaacttctctatctcgaatttcgctgccatggttttacaccaaatatttttcattcaaactagaccagagtaataagaattcttttat |
30967840 |
T |
|
| Q |
301 |
gatgtggaagatcagttt-aaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
30967839 |
gatgtggaagatcagtttaaaactccaaccacagagcatactaagattttt |
30967789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 248
Target Start/End: Original strand, 8480425 - 8480640
Alignment:
| Q |
33 |
aatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaggtctg |
132 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||||||||||| || | || |||||||||| ||||||||||| |||||||||| |||| ||| |
|
|
| T |
8480425 |
aatacttgaaaataccgagtctgcaattgctaagtgcaaattggaaaaaacgttgtcatccatctttttccacttttaatcagtgatatttgcatatcta |
8480524 |
T |
|
| Q |
133 |
ccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttctctatctcaaatt |
232 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||| ||||||||||| |||||||| | |||||||| ||| | || |||||||| || | ||||| |
|
|
| T |
8480525 |
ccataaattgcatctaggcaattatcttttcttagaatcgcccttatctttaatttccacaatgaaaaattactctcattaaacttctcaatattaaatt |
8480624 |
T |
|
| Q |
233 |
tcgctgccatggtttt |
248 |
Q |
| |
|
| | || ||||||||| |
|
|
| T |
8480625 |
ttgttgtcatggtttt |
8480640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 85 - 350
Target Start/End: Original strand, 23012182 - 23012436
Alignment:
| Q |
85 |
ttatcatccatctctttccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttca |
184 |
Q |
| |
|
||||| |||||||||||| ||||||| || ||||||||| || || || ||||||||||| |||| ||||||||||| | ||||||||| |||| |||| |
|
|
| T |
23012182 |
ttatcttccatctctttcaacttttcttctgtgatatctacatgtgggc-atctattgcgtttaggaaattatcttttatcaaaattgccattatattca |
23012280 |
T |
|
| Q |
185 |
atttccaaagggaaaaatttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttcttt---caaactagaccgga |
281 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| |||| ||||| |||| |||||||||| ||||||||||||| ||| ||||||| | ||| |
|
|
| T |
23012281 |
atttccatagggaaaaatttctcccattcaact------tctcgaattttgctgtcatggttttataccaaatatttttatttctccaaactaaattgga |
23012374 |
T |
|
| Q |
282 |
ataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||| || ||| |||||||||||||||| ||||| | ||||||| ||||||||||| ||||| |
|
|
| T |
23012375 |
ataaaaaaaat-------tgatgtggaagatcaggctaaactgtaaccacaaagcatactaagtttttt |
23012436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 16777060 - 16777109
Alignment:
| Q |
290 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
16777060 |
aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
16777109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 41719140 - 41718791
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41719140 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
41719041 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41719040 |
tccacttttcatcagtgatatctgcaggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaa |
41718941 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718940 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
41718841 |
T |
|
| Q |
301 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718840 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
41718791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 34352743 - 34352542
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352743 |
tcccaaatctcctttgccgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
34352644 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34352643 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaagcaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaa |
34352544 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
34352543 |
at |
34352542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 23319018 - 23318791
Alignment:
| Q |
5 |
agatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttcca |
104 |
Q |
| |
|
||||||||||||| | ||| || || |||||||||||||||||||||| | |||||||| ||| ||||||||||| | || ||||||||||||||||| |
|
|
| T |
23319018 |
agatctcctttgcagactttttctctgcaatacttgacaataccgagtttgtcattgctaagtgaaaattggcaacatcgttgtcatccatctctttcca |
23318919 |
T |
|
| Q |
105 |
cttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaattt |
204 |
Q |
| |
|
||||| || ||||||||||||||| ||||| |||||||||| |||||| |||||| ||| || |||||||||| |||||||| || || ||||| |
|
|
| T |
23318918 |
cttttgatcggtgatatctgcaggttcaccatcaattgcgtctacgcaattttctttt-ttagaaccacccttatctttaatttccacagtgagaaatta |
23318820 |
T |
|
| Q |
205 |
ctcccgttgaacttctctatctcaaattt |
233 |
Q |
| |
|
||||| || ||||||| |||| |||||| |
|
|
| T |
23318819 |
ctcccattaaacttcttaatcttaaattt |
23318791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 42266633 - 42266284
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266633 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
42266534 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42266533 |
tccacttttcatcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaa |
42266434 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266433 |
atttctcccgttgaatttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
42266334 |
T |
|
| Q |
301 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266333 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
42266284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 48701408 - 48701757
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701408 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
48701507 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48701508 |
tccacttttcatcagtgatatctgcaggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaa |
48701607 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701608 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
48701707 |
T |
|
| Q |
301 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701708 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
48701757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 30949770 - 30950119
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30949770 |
tcccagatctcctttgctgtctttttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
30949869 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30949870 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaa |
30949969 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
30949970 |
ttttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttcattcaaactagaccggagtaataagaattcttttct |
30950069 |
T |
|
| Q |
301 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950070 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
30950119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1999644 - 1999424
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
||||| ||||||||||| | ||| || || | |||||||||||||||||| | |||||||||| ||||||||||| ||| || || ||||||||||||| |
|
|
| T |
1999644 |
tcccatatctcctttgcagactttttctctggaatacttgacaataccgaatttgccattgctaagtgcaaattggtaacagcgttgtcatccatctctt |
1999545 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||| || ||||||||||| ||||||||||| || || |
|
|
| T |
1999544 |
tccacttttgatcagtgatatttgcaggtctgccatcaattgcatctaggcaattgtcttttcttagaaccgcccttatctttaatttccaaagtgagaa |
1999445 |
T |
|
| Q |
201 |
atttctcccgttgaacttctc |
221 |
Q |
| |
|
||| ||||| || |||||||| |
|
|
| T |
1999444 |
attactcccattaaacttctc |
1999424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 33 - 268
Target Start/End: Original strand, 21514658 - 21514893
Alignment:
| Q |
33 |
aatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaggtctg |
132 |
Q |
| |
|
|||||||||||||| || ||| ||||||| ||||||||||| ||||| |||| || || | |||||||||||||| ||||| |||| || || || |
|
|
| T |
21514658 |
aatacttgacaatattgaatccaccattgcaaggtgcaaatttgcaacaacattgtcttcattttctttccacttttcatcagtcgtatccacaagtttg |
21514757 |
T |
|
| Q |
133 |
ccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttctctatctcaaatt |
232 |
Q |
| |
|
|| | ||| ||| ||||||||||| |||||| |||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21514758 |
ccttttatcacgtttaggcaattattttttctcaaaattgcccttatctacaatttccacaaggaaaaatttctcccattgaacttctctatctcaaatt |
21514857 |
T |
|
| Q |
233 |
tcgctgccatggttttacaccaaatatttttctttc |
268 |
Q |
| |
|
||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
21514858 |
tcgttgccatggttttgcaccaaatatttttttttc |
21514893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 1979778 - 1979696
Alignment:
| Q |
268 |
caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||| |||||||||| || ||| ||||| ||||||| | | || |||||||||||| |
|
|
| T |
1979778 |
caaactagactggaataattagaattcgtttatgatgtggaatattagtctaaactgcaaccatataacaaactaagattttt |
1979696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 5822862 - 5823211
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822862 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
5822961 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5822962 |
tccacttttcatcagtgatatctgcaggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaa |
5823061 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823062 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
5823161 |
T |
|
| Q |
301 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823162 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
5823211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 2816850 - 2817199
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816850 |
tcccagatctcctttgctgtcttcttttcttcaatacttgacaataccgagtccaccatatctaggtgcaaattggcaacggcattatcatccatctctt |
2816949 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2816950 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaaaggaaaa |
2817049 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817050 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttcattcaaactagaccggaataataagaattcttttct |
2817149 |
T |
|
| Q |
301 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
2817150 |
gatgtggaagatcagtttaaaccacaaccacatagcatactaagattttt |
2817199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 42585687 - 42585440
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
||||||||||||||||| | ||| || || ||||||||||| |||||||| || |||||||||| ||||||||||||||| | || ||||||||||||| |
|
|
| T |
42585687 |
tcccagatctcctttgcagactttttctctgcaatacttgataataccgaatctgccattgctaagtgcaaattggcaacaacgttgtcatccatctctt |
42585588 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| || |||||||||||| |||||||| || || || |
|
|
| T |
42585587 |
tccacttttgatcagtgatatctgcaggtctgccatcaattgcatctaggcaattgtcttttcttagaactgcccttatctttaatttccacagtgagaa |
42585488 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggtttt |
248 |
Q |
| |
|
||| ||||| || |||||||| |||| |||||| | |||||||||||| |
|
|
| T |
42585487 |
attactcccattaaacttctcaatcttaaattttgttgccatggtttt |
42585440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 25877532 - 25877355
Alignment:
| Q |
32 |
caatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaggtct |
131 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||| |||||||||||||| |||| |||||||||||||| ||||||| |||||||||| |||| | || |
|
|
| T |
25877532 |
caatacttgacaatatcgagtctgccattactaagtgcaaattggcaataacattgtcatccatctcttttcacttttgatcagtgatatttgcatgcct |
25877433 |
T |
|
| Q |
132 |
gccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctccc |
209 |
Q |
| |
|
||||| | || |||| | |||| |||||||||| || |||||||||| ||||| || || || ||||| ||||| |
|
|
| T |
25877432 |
accatcaactgtgtctcgacaatagtcttttcttagaacatcccttatctttaattttcacagtgagaaattactccc |
25877355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 5382624 - 5382673
Alignment:
| Q |
290 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5382624 |
aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
5382673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 13722392 - 13722446
Alignment:
| Q |
285 |
ataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
13722392 |
ataataattcttttctgatgtggaagatcagattaaactacaaccacagagcata |
13722446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 47277428 - 47277494
Alignment:
| Q |
55 |
gccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatat |
121 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
47277428 |
gccattgctaggtgcaaattggcaacaataatatcatctatctctttccatttttcgtcaatgatat |
47277494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 9443679 - 9444028
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443679 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
9443778 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9443779 |
tccacttttcatcagtgatatctgtaggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaa |
9443878 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443879 |
atttctcccgttgaatttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
9443978 |
T |
|
| Q |
301 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443979 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
9444028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 24598069 - 24598316
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
||||||||||||||||| | ||| || || |||||||||||||||||||| || |||||||||| ||||||||||||||| || || ||||||||||||| |
|
|
| T |
24598069 |
tcccagatctcctttgcagactttttctctgcaatacttgacaataccgaatctgccattgctaagtgcaaattggcaacagcgttgtcatccatctctt |
24598168 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| ||||||||||| |||||||| || || || |
|
|
| T |
24598169 |
tccacttttgatcggtgatatctgcaggtctgccatcaattgcatctaggcaattgtcttttcttagaatcgcccttatctttaatttccacagtgagaa |
24598268 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggtttt |
248 |
Q |
| |
|
||| ||||| || |||||||| |||| |||||| | |||||||||||| |
|
|
| T |
24598269 |
attactcccattaaacttctcaatcttaaattttgttgccatggtttt |
24598316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 87267 - 87218
Alignment:
| Q |
290 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
87267 |
aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
87218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 19803226 - 19803179
Alignment:
| Q |
292 |
ttcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
19803226 |
ttcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
19803179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 826209 - 825860
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
826209 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggaattatcatccatctctt |
826110 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
826109 |
tccacttttcatcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccatagcgaaaa |
826010 |
T |
|
| Q |
201 |
atttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttct |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
826009 |
atttctcccgttgaacttctcaatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaacaataagaattcttttct |
825910 |
T |
|
| Q |
301 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825909 |
gatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
825860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 13843394 - 13843733
Alignment:
| Q |
10 |
tcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccactttt |
109 |
Q |
| |
|
||||||| || |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||| | |||||||| |||||||| |||||| |
|
|
| T |
13843394 |
tcctttgttgccttcttttcaacaatacttgacaatatcgagtctaccattgcaaggtgcaaattggcaacaacgttatcatctatctctttttactttt |
13843493 |
T |
|
| Q |
110 |
cgtcagtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctccc |
209 |
Q |
| |
|
|||||||||||| |||| || ||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
13843494 |
cgtcagtgatatttgcaagtttgccatcaattgtgtctacacaattatcttttcttaaaattgcttgtatcttcaatttccaaagggaagaatttctcct |
13843593 |
T |
|
| Q |
210 |
gttgaacttctctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaa |
309 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||||||||||| | ||||||||| || || | || ||||||||||||| |||| |||||||||| |
|
|
| T |
13843594 |
gttgaacttttctatctcaaatttcgatgtcatggttttacaccaactttttttcttt-aagctggtcctaaataataagaatttttttttgatgtggaa |
13843692 |
T |
|
| Q |
310 |
gatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||| | || | ||||||||| | |||||||| |||||| |
|
|
| T |
13843693 |
aatcaatctatattgcaaccacataacatactaatattttt |
13843733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 25538865 - 25538795
Alignment:
| Q |
193 |
agggaaaaatttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaaatattttt |
263 |
Q |
| |
|
|||||||||||||| | ||||| ||| ||||||||||||||||| |||| |||||||| ||||| |||| |
|
|
| T |
25538865 |
agggaaaaatttcttatgctgaacctctttatctcaaatttcgctgacatgattttacactaaataatttt |
25538795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 25441478 - 25441140
Alignment:
| Q |
18 |
tgtcttcttttcagcaatacttgacaataccgagtccgccattg----ctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||| | | |||||||||||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
25441478 |
tgtcttcttttcagcaatacttgacaatactgagtccgtcattggcgtcgatgtgcaaattggcgacgacattatcatccatctctttccactttccgtc |
25441379 |
T |
|
| Q |
114 |
agtgatatctgcaggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttg |
213 |
Q |
| |
|
||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||| ||| |
|
|
| T |
25441378 |
agtgatatctgcaggtctgacatctatcgcatctaggcaattatcttctcttaaaatttcccttatcttcaatttccataggaaaaaatttctcccattg |
25441279 |
T |
|
| Q |
214 |
aacttctctatctcaaatttcgctgccatggttttacaccaaata--tttttctttcaaactagaccggaataataagaattcttttctgatgtggaaga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
25441278 |
aacttctctatctcaaatttcgctgccatggtttttcaccaaatatgttttttcttcaaactagacaggaataataagaattcttttatgatgtgaaaga |
25441179 |
T |
|
| Q |
312 |
tcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25441178 |
tcagtttacaccgcaaccacagagcatactaagattttt |
25441140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 8138045 - 8138400
Alignment:
| Q |
1 |
tcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctt |
100 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||||| ||||||| || |
|
|
| T |
8138045 |
tccccgatctcgtttgttgtcttcttttcagcaatacttgacaatacccagtctgccattgctaggtgcaggttggcaacaacattatcttccatctttt |
8138144 |
T |
|
| Q |
101 |
tccacttttcgtcagtgatatctgcaggtctgccatctattgcgtctaggcaatta-tcttttcttaaaattgcccttatcttcaatttccaaagggaaa |
199 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
8138145 |
tccactttttgttagtgatatctgcaggtctgccatctattgcgtctatgcaattatttttttcttaaaattgcccttatcttcaatttcaatagggaaa |
8138244 |
T |
|
| Q |
200 |
aatttctcccgttgaacttctctatctcaaatttcgctgccatggttttacaccaa-----atatttttctttcaaactagaccggaataataagaattc |
294 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| | | |||| ||||||||| |
|
|
| T |
8138245 |
aatttctctcgttgaacttctctatctaaaatttcgctgccatggttttacaccaattattttatttttctctcaaactatatcaaaatagtaagaattc |
8138344 |
T |
|
| Q |
295 |
ttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagattttt |
350 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| |||||| | ||||||||||||||||| |
|
|
| T |
8138345 |
ttttatgatgtggaagttcagtctaaaccacaaccaaatagcatactaagattttt |
8138400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 11712121 - 11712072
Alignment:
| Q |
290 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
11712121 |
aattattttctgatgtggaagatcagattaaactgcaaccacagagcata |
11712072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 28822 - 28871
Alignment:
| Q |
290 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
28822 |
aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
28871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 2796411 - 2796460
Alignment:
| Q |
290 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
2796411 |
aattcttttctgatgtggaagatcacattaaactgcaaccacagagcata |
2796460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 42376144 - 42376095
Alignment:
| Q |
290 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
42376144 |
aattcttttctgatgtggaagatcagattaaactgcaaccacaaagcata |
42376095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 46344296 - 46344372
Alignment:
| Q |
141 |
tgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaact |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| |||| || | |||||||||||||| ||||||| |
|
|
| T |
46344296 |
tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact |
46344372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 14476165 - 14476214
Alignment:
| Q |
290 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| ||||||| |||||||| |
|
|
| T |
14476165 |
aattcttttctgatgtggaagatccgattaaactgcaaccatagagcata |
14476214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 23201196 - 23201147
Alignment:
| Q |
290 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
339 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
23201196 |
aattcttttctgatgtggaagatcatattaaactgcaaccacatagcata |
23201147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University