View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2241_low_7 (Length: 333)
Name: NF2241_low_7
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 35866628 - 35866313
Alignment:
| Q |
1 |
caaaggccaaagaatgagtttaattgtcccaattgatcaaattttttactcccctgttaagcttcttggtctaatggtttattttacaaacttaggatta |
100 |
Q |
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| T |
35866628 |
caaagaccaaagaatgagttttattgtcccaattgatcaaattttttactcccctgttaagcttcttggtctaatggtttattttacaaacttaggatta |
35866529 |
T |
|
| Q |
101 |
taatgttaattacgagtaagttccactttctatactatagaaaagtcattaggcactaaaaaacacatgttgaacacagtaagagcttgtttgaaacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35866528 |
taatgttaattacgagtaagttccactttctatactatagaaaagtcattaggcactaaaaaacacatgttgaacacagtaagagcttgtttgaaacttt |
35866429 |
T |
|
| Q |
201 |
ggatagttaaataacttaagcagaatagtaacttattgcaatattagtcacttttaaagcaatttgacttgtgtgttatctttttgataggagaaacgaa |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35866428 |
ggatagttaaataagttaagcagaatagtaacttattgcaatattagtcacttttaaagcaatttgacttgtgtgttatctttttgataggagaaacgaa |
35866329 |
T |
|
| Q |
301 |
ataactataccaaata |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
35866328 |
ataactataccaaata |
35866313 |
T |
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