View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242-Insertion-2 (Length: 444)
Name: NF2242-Insertion-2
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 31506271 - 31506588
Alignment:
| Q |
8 |
actcactctctttatcaacttgttattgggccacttcattggaggattcaaaatatggaatcatgcttcatgctcactccatagtccatacccacccata |
107 |
Q |
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| T |
31506271 |
actcactctctttatcaacttgttattgggccacttcattggaggattcaaaatatggaatcatgcttcatgctcactccatagtccatacccacccata |
31506370 |
T |
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| Q |
108 |
caaagattataatcaataataatcatgaattgaagcttcccatacatattttattatcttactatagctatagaatctggatcctcattcctatgaacct |
207 |
Q |
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| T |
31506371 |
caaagattataatcaataataatcatgaattgaagcttcccatacatattttattatcttactatagttatagaatctggatcctcattcctatgaacct |
31506470 |
T |
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| Q |
208 |
aacagtttcttaagctgcaacataataccgcagttgtggagaattcaattttgaaggaatgatacttttcttgttattaaagagtctagcagcaaaactc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506471 |
aacagtttcttaagctgcaacataataccgcagttgtggagaattcaattttgaaggaatgatacttttcttgttattaaagagtctagcagcaaaactc |
31506570 |
T |
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| Q |
308 |
acatacttaaagtgcata |
325 |
Q |
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| T |
31506571 |
acatacttaaagtgcata |
31506588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 327 - 444
Target Start/End: Original strand, 31506697 - 31506814
Alignment:
| Q |
327 |
ttgaggggactgatatagttaattgtgtaaaggtttttgataaagatttggtgttcaattactcaaagtagagtgtgatgatctcttatgcttgcctcat |
426 |
Q |
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| T |
31506697 |
ttgaggggactgatatagttaattgtgtaaaggtttttgataaagatttggtgttcaattactcaaagtagagtgtgatgatctcttatgcttgcctcat |
31506796 |
T |
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| Q |
427 |
aacgcaacatatatcaaa |
444 |
Q |
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| T |
31506797 |
aacgcaacatatatcaaa |
31506814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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