View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242-Insertion-5 (Length: 170)
Name: NF2242-Insertion-5
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242-Insertion-5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 8e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 8e-78
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 10238934 - 10239096
Alignment:
| Q |
8 |
ccatcttcctcatcccatgcgtttatcaaatgcataatattaagcccaggaacatcaaaccacttcatcttcgactcgttatcagcataacgaggtagaa |
107 |
Q |
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| T |
10238934 |
ccatcttcctcatcccatgcgtttatcaaatgcataatattaagcccaggaacatcaaaccacttcatcttcgactcgttatcagcataacgaggtagaa |
10239033 |
T |
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| Q |
108 |
ttccaatccttggaaccttcgatggatccgaccttacgggggaaccaccgaaaatcatgtcaa |
170 |
Q |
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| T |
10239034 |
ttccgatccttggaactttcgatggatcggaccttaccggggaaccaccgaaaatcatgtcaa |
10239096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 10230154 - 10230312
Alignment:
| Q |
8 |
ccatcttcctcatcccatgcgtttatcaaatgcataatattaagcccaggaacatcaaaccacttcatcttcgactcgttatcagcataacgaggtagaa |
107 |
Q |
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| T |
10230154 |
ccatcttcctcatcccatgcgtttatcgtatgcataatattaaaccctggaacatcaaaccacttcatcttggactcgtcattagcataacgaggtagaa |
10230253 |
T |
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| Q |
108 |
ttccaatccttggaaccttcgatggatccgaccttacgggggaaccaccgaaaatcatg |
166 |
Q |
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| T |
10230254 |
ttccgatccttgaaactttagatggatccgatctcaccggagaaccaccgaaaatcatg |
10230312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 10255670 - 10255509
Alignment:
| Q |
9 |
catcttcctcatcccatgcgtttatcaaatgcataatattaagcccaggaacatcaaaccacttcatcttcgactcgttatcagcataacgaggtagaat |
108 |
Q |
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| T |
10255670 |
catcttccccatcccatgagtttatcgcgtgcataatattaaaccctggcacatcaaaccatttcatcttcgactcatcactagcatatctcggtagaat |
10255571 |
T |
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| Q |
109 |
tccaatccttggaaccttcgatggatccgaccttacgggggaaccaccgaaaatcatgtcaa |
170 |
Q |
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| T |
10255570 |
tccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaaatcatgtcaa |
10255509 |
T |
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