View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242R-Insertion-10 (Length: 511)
Name: NF2242R-Insertion-10
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242R-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 257 - 491
Target Start/End: Complemental strand, 31506026 - 31505789
Alignment:
| Q |
257 |
attcaccaactgcttagaacaatgtgcaaaactataactaagcctcagtta----gtaatataacattcatgttattattgtctagtagttgcttttcgt |
352 |
Q |
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| T |
31506026 |
attcaccaactgcttagaacaatgtgcaaaactataactaagcctcagttaattagtaatataacattcatgttattattgtctagtagttgcctttcgt |
31505927 |
T |
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| Q |
353 |
ttaaggaaaactactatagtaaacacaggccgaggtatgtttagattagagatatttttatattgcattgtatagtagttaacagtattaaaccaaattc |
452 |
Q |
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| T |
31505926 |
ttaaggaaaactactatagtaaacacaggccgaggtatgtttagattagagatatttttatattgcattgca-agtagttaatattattaaaccaaattc |
31505828 |
T |
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| Q |
453 |
cattccatttctagcttgattaatacctaaaccctatat |
491 |
Q |
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| T |
31505827 |
cattccatttctagcttgattaatacctaaaccctatat |
31505789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 31506275 - 31506076
Alignment:
| Q |
9 |
tgagtgttagcatgtgagaaggactaatatcgatgataaagggcactgtatttggccacaccaattgatacgagtcccaagcaaaataaaattgagattt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31506275 |
tgagtgttagcatgtgagaaggactaatatcgatgataaagggcactgtatttggccacaccaattgaaacgagtcccaagcaaaataaaattgagattt |
31506176 |
T |
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| Q |
109 |
tggtacaaaaagaaccgttaaacatcattttcttttcctttcccatgtccctttcactttgtcctcctcttcagctttataaactaatccatgttcagag |
208 |
Q |
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| T |
31506175 |
tggtacaaaaagaaccgttaaacatcattttcttttcctttcccatgtccctttcactttgtcctcctcttcagctttataaactaatccatgttcagag |
31506076 |
T |
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