View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2242R-Insertion-11 (Length: 482)

Name: NF2242R-Insertion-11
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2242R-Insertion-11
NF2242R-Insertion-11
[»] chr6 (3 HSPs)
chr6 (9-316)||(17986654-17986958)
chr6 (315-419)||(747214-747318)
chr6 (320-380)||(2970313-2970373)
[»] chr5 (1 HSPs)
chr5 (320-482)||(17020670-17020833)
[»] chr3 (4 HSPs)
chr3 (377-427)||(51298289-51298339)
chr3 (315-377)||(16047069-16047129)
chr3 (377-426)||(30129225-30129273)
chr3 (316-364)||(30129150-30129198)
[»] chr1 (1 HSPs)
chr1 (325-418)||(30962136-30962229)
[»] chr7 (2 HSPs)
chr7 (320-364)||(49169296-49169340)
chr7 (382-432)||(43354314-43354364)
[»] chr4 (3 HSPs)
chr4 (325-385)||(46546575-46546635)
chr4 (386-427)||(46546653-46546694)
chr4 (382-432)||(1034976-1035027)
[»] chr8 (1 HSPs)
chr8 (204-282)||(35253665-35253745)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 17986958 - 17986654
Alignment:
Q  9 ccactccatggctagagtagtgcatgagttcagctagggttttatgtttcgaagttttgttttgaaacaaaggaatattatatttataggtttctattgt 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17986958 ccactccatggctagagtagtgcgtgagttcagctagggttttatgtttcgaagttttgttttgaaacaaaggaatattatatttataggtttctattgt 17986859  T
Q  109 cgcttagtcagaaacctaattcaaggtatcaaccaatattatccagatttgagttaaatcttaccgagttctgaataatannnnnnnnnnnnnnnaagaa 208  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||                |||||    
T  17986858 cgctgagtcagaaacctaattcaaggtatcaaccgatattatccagatttgagttaactcttaccgaattctgaataat---tttttttttttttaagaa 17986762  T
Q  209 atcaaaatcatataaataaccaaaggaatcctcccaacacaagatgtattagagaataaagtcaaaatttacaacagtagttcaacaacaaaaaccatga 308  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17986761 atcaaaatcaaataaataaccaaaggaatcctcccaacacaagatgtattagagaataaagtcaaaatttacaacagtagttcaacagcaaaaaccatga 17986662  T
Q  309 attatcaa 316  Q
    ||||||||    
T  17986661 attatcaa 17986654  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 419
Target Start/End: Original strand, 747214 - 747318
Alignment:
Q  315 aagaataaagatacatgtacaccctttttccttgtaccacctatacacacaccccatgtggcatttatttattttattaattaaaaaagaaaaacaacat 414  Q
    ||||||||  ||||||| ||||||| ||||||| ||||| | |||||||| ||  |||||||||||||||||||||||||||||| ||||||| |||||     
T  747214 aagaataattatacatggacaccctctttccttataccatccatacacactccttatgtggcatttatttattttattaattaaagaagaaaatcaacac 747313  T
Q  415 aacat 419  Q
    |||||    
T  747314 aacat 747318  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 2970373 - 2970313
Alignment:
Q  320 taaagatacatgtacaccctttttccttgtaccacctatacacacaccccatgtggcattt 380  Q
    |||||||||||||||| ||||||||   | |||||  ||||||||||||||||||||||||    
T  2970373 taaagatacatgtacatcctttttctccggaccactcatacacacaccccatgtggcattt 2970313  T

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Target: chr5 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 320 - 482
Target Start/End: Complemental strand, 17020833 - 17020670
Alignment:
Q  320 taaagatacatgtacaccctttttc-cttgtaccacctatacacacaccccatgtggcatttatttattttattaattaaaaaagaaaaacaacataaca 418  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17020833 taaagatacatgtacaccctttttttcttgtaccacccatacacacaccacatgtggcatttatttattttattaattaaaaaagaaaaacaacacaaca 17020734  T
Q  419 ttctctctcctctcacaaagnnnnnnnncattctctcttcctctgcaaatgtagccgctctctt 482  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  17020733 ttctctctcctctcacaaagaaaaaaaacattctctcttcctctgcaaatgtagccgctctctt 17020670  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 51298339 - 51298289
Alignment:
Q  377 atttatttattttattaattaaaaaagaaaaacaacataacattctctctc 427  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||||    
T  51298339 atttatttattttataaactaaaaaagaaaaacaacacaacattctctctc 51298289  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 16047069 - 16047129
Alignment:
Q  315 aagaataaagatacatgtacaccctttttccttgtaccacctatacacacaccccatgtggca 377  Q
    |||| |||||||||||||||| ||||||||||||||||||  |||||||| |||| |||||||    
T  16047069 aagagtaaagatacatgtaca-cctttttccttgtaccactcatacacac-ccccttgtggca 16047129  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 30129225 - 30129273
Alignment:
Q  377 atttatttattttattaattaaaaaagaaaaacaacataacattctctct 426  Q
    |||||||||||||||||||| |||||||||| ||||| |||| |||||||    
T  30129225 atttatttattttattaatt-aaaaagaaaaccaacacaacactctctct 30129273  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 30129150 - 30129198
Alignment:
Q  316 agaataaagatacatgtacaccctttttccttgtaccacctatacacac 364  Q
    |||||||  ||||||  ||||||||||||||||||||||| ||||||||    
T  30129150 agaataattatacataaacaccctttttccttgtaccacccatacacac 30129198  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 30962229 - 30962136
Alignment:
Q  325 atacatgtacaccctttttccttgtaccacctatacacacaccccatgtggcatttatttattttattaattaaaaaagaaaaacaacataaca 418  Q
    ||||||| ||||| | ||||||| |||||   |||| ||| ||  |||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  30962229 atacatggacaccttctttccttataccattcatactcactccttatgtggcatttatttattttattaattaaagaagaaaatcaacacaaca 30962136  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 49169340 - 49169296
Alignment:
Q  320 taaagatacatgtacaccctttttccttgtaccacctatacacac 364  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  49169340 taaagatacatgtacaccctttttccttgtaccactcatacacac 49169296  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 432
Target Start/End: Complemental strand, 43354364 - 43354314
Alignment:
Q  382 tttattttattaattaaaaaagaaaaacaacataacattctctctcctctc 432  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||| |||||    
T  43354364 tttattttattaattaaaaaagaaaaccaacacaacattttctcttctctc 43354314  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 46546575 - 46546635
Alignment:
Q  325 atacatgtacaccctttttccttgtaccacctatacacacaccccatgtggcatttattta 385  Q
    ||||||| |||||||||||||||||| |||| ||||||||| |  ||||||||||||||||    
T  46546575 atacatggacaccctttttccttgtagcacccatacacacagcttatgtggcatttattta 46546635  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 46546653 - 46546694
Alignment:
Q  386 ttttattaattaaaaaagaaaaacaacataacattctctctc 427  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  46546653 ttttattaattaaaaaagaaaaccaacacaacattctctctc 46546694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 432
Target Start/End: Complemental strand, 1035027 - 1034976
Alignment:
Q  382 tttattttattaattaaaaaa-gaaaaacaacataacattctctctcctctc 432  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||    
T  1035027 tttattttattaattaaaaaaagaaaaccaacacaacattctctctcttctc 1034976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 35253745 - 35253665
Alignment:
Q  204 aagaaatcaaaatcatataaataaccaaagga--atcctcccaacacaagatgtattagagaataaagtcaaaatttacaa 282  Q
    ||||||| ||||| ||||| ||||||||| ||  ||||||||  |||||||||||| ||||||| ||| ||||||||||||    
T  35253745 aagaaattaaaatgatatatataaccaaacgattatcctcccggcacaagatgtatcagagaattaagccaaaatttacaa 35253665  T

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