View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242R-Insertion-12 (Length: 470)
Name: NF2242R-Insertion-12
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242R-Insertion-12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Original strand, 36970635 - 36971097
Alignment:
| Q |
9 |
ttctcttttgtagtccaatccgtaacgaaatagaagcnnnnnnn-catttgacttttaaaacccttttaactgcttatattttcttaccgatgactacta |
107 |
Q |
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| T |
36970635 |
ttctcttttgtagtccaatccgtaacgaaatagaagcaaaaaaaacatttgacttttaaaacccttttaactgcttgtattttcttaccgatgactacta |
36970734 |
T |
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| Q |
108 |
tgtttggtacttggatttgttgcatcttcttcaaacttgtcttttgcagtttcatgaagtttgttctgatttattctaataagttcagcttgtctgaatt |
207 |
Q |
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| T |
36970735 |
tgtttggtacttggatttgttgcatcttcttcaaacttgtcttttgcagtttcatgaagtttgttctgatttattctaataagttcagcttgtctgaatt |
36970834 |
T |
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| Q |
208 |
tatacaagtaccttccaatagcttcagcatagttgtcaaaccctaacgaacacagagcccaacagatatcatccccattaacggtctcgcgattctcctt |
307 |
Q |
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| T |
36970835 |
tatacaagtaccttccaatagcttcagcatagttgtcaaaccctaacgaacacagagcccaacagatatcgtccccattaacggtcttgcgattctcctt |
36970934 |
T |
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| Q |
308 |
gtgacacttgtcagatgcttcacctgtcacgaaacttatgaactctgtcgcacattcttgcatcaactgtttgctttcttttgagatctttgcattggga |
407 |
Q |
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| T |
36970935 |
gtgacacttgtcagatgcttcacctgtcacgaaacttatgaattctgtcgcacattcttgcatcaactgtttgctttcttttgagatctttgcattggga |
36971034 |
T |
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| Q |
408 |
ggaagattttgcttcattattctacccacattcgctatgggcaacgttttatctccttcatcg |
470 |
Q |
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| T |
36971035 |
ggaagattttgcttcattattctacccacattcgctatgggcaacgttttatctccctcatcg |
36971097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 39786313 - 39786381
Alignment:
| Q |
263 |
agcccaacagatatcatccccattaacggtctcgcgattctccttgtgacacttgtcagatgcttcacc |
331 |
Q |
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| T |
39786313 |
agcccaacaaacatcatcaccattcactgtcttgcgcttctccttgtgacacttgtcagatgcttcacc |
39786381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 371
Target Start/End: Complemental strand, 56068049 - 56067978
Alignment:
| Q |
300 |
ttctccttgtgacacttgtcagatgcttcacctgtcacgaaacttatgaactctgtcgcacattcttgcatc |
371 |
Q |
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| T |
56068049 |
ttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatc |
56067978 |
T |
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