View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2242R-Insertion-13 (Length: 417)
Name: NF2242R-Insertion-13
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242R-Insertion-13 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 417
Target Start/End: Complemental strand, 51805177 - 51804769
Alignment:
| Q |
9 |
gtttcgtgtcagtaataaccgtttggaaggttctgttccaaaaggactcttgagtttaccacatgtttcaatcattgatttgagcagtaacaatctgact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51805177 |
gtttcgtgtcagtaataaccgtttggaaggttctgttccaaaaggactcttgagtttatcacatgtttcaatcattgatttgagcagcaacaatctgacc |
51805078 |
T |
|
| Q |
109 |
ggtccgattcccgagatcaacggaaattctagaaacttgtctgagcttttccttcagaggaacaagatttcaggacaattaacaccaacaatctctagag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
51805077 |
ggtccgattcccgagatcaacggaaattctagaaacttgtctgagcttttccttcagaggaacaagatttcaggacaaataacaccaacaatctctagtg |
51804978 |
T |
|
| Q |
209 |
cttataaccttgtcaaaattgatttcagttataactttctttctggtccaattccttctgagattggtaaccttagaaagcttaacttgcttatgctaca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51804977 |
cttataaccttgtcaaaattgatttcagttataactttctttctggtccaattccttctgagattggtaaccttagaaagcttaacttgcttatgctaca |
51804878 |
T |
|
| Q |
309 |
agcaaacaagctgaactcttctattcctgattcattctcttccttggaatcactcaaccttctagatctttccagtaatctcttaaccggaaacatccct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51804877 |
agcaaacaagctgaactcttctattcctgattcattctcttccttggaatcactcaaccttctagatctttccagtaatctcttaaccggaaacatccct |
51804778 |
T |
|
| Q |
409 |
gaaagcctc |
417 |
Q |
| |
|
||||||||| |
|
|
| T |
51804777 |
gaaagcctc |
51804769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 7423196 - 7423234
Alignment:
| Q |
131 |
gaaattctagaaacttgtctgagcttttccttcagagga |
169 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
7423196 |
gaaattctagaaacttgtctgaacttttccatcagagga |
7423234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 321
Target Start/End: Original strand, 20017733 - 20017879
Alignment:
| Q |
175 |
atttcaggacaattaacaccaacaatctctagagcttataaccttgtcaaaattgatttcagttataactttctttctggtccaattccttctgagattg |
274 |
Q |
| |
|
|||||| |||| |||| || ||||||||| ||||| || ||||||| ||||||||||||||||||| ||||| | ||||||||| ||||| | |||| |
|
|
| T |
20017733 |
atttcaagacatataactccgacaatctcttgagctattagccttgtcgaaattgatttcagttataaatttctctatggtccaatcccttcataaattg |
20017832 |
T |
|
| Q |
275 |
gtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctg |
321 |
Q |
| |
|
||||||||||||| ||||| |||||| || |||||| ||||||||| |
|
|
| T |
20017833 |
gtaaccttagaaaacttaatttgcttgtgttacaagggaacaagctg |
20017879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 20017589 - 20017652
Alignment:
| Q |
9 |
gtttcgtgtcagtaataaccgtttggaaggttctgttccaaaaggactcttgagtttaccacat |
72 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
20017589 |
gtttcgtatcagtaacaaccgtttagaaggtttggttccaaagtgactcttaagtttaccacat |
20017652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University