View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2242R-Insertion-16 (Length: 275)
Name: NF2242R-Insertion-16
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242R-Insertion-16 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 5537514 - 5537785
Alignment:
| Q |
8 |
agttcatgccgtatttttaagcaaatcaaatacactaaattgaacatatatttgacattacgatggatatgt--gactcacaacagttttcataattttt |
105 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||| ||||||||| | |||||| ||| ||||| ||||||||||||||| ||| |||||| |
|
|
| T |
5537514 |
agttcatgccatatttttaaacaaatcaaatacactaaattgagcatatatttaatattacggtgggtatgtcagactcacaacagtttccatgattttt |
5537613 |
T |
|
| Q |
106 |
cnnnnnnn--cactttttaacttttgcaaaaccacagttgatcaccgtaattcttacctatccacgatgaacaaacatacaccaaacaagttgttcccat |
203 |
Q |
| |
|
| ||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5537614 |
caaaaaaaaccactttttaacttttgcaaaatcacggtagatcaccgtaattcttacctattcacgatgaacaaacatacaccaaacaagttgttcccat |
5537713 |
T |
|
| Q |
204 |
caaaggcatgaatatgttcattttcattgaattcattcaaattatctcgctctactcctatttatttacttg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5537714 |
caaaggcatgaatatgttcattttcattgaattcattcaaattatctcactctactcctatttatttacttg |
5537785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University