View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2242R-Insertion-18 (Length: 187)

Name: NF2242R-Insertion-18
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2242R-Insertion-18
NF2242R-Insertion-18
[»] chr2 (4 HSPs)
chr2 (27-187)||(32149144-32149304)
chr2 (27-183)||(1173862-1174017)
chr2 (28-58)||(9034006-9034036)
chr2 (28-68)||(41735843-41735883)
[»] chr4 (3 HSPs)
chr4 (46-187)||(41727108-41727249)
chr4 (25-54)||(12846024-12846053)
chr4 (25-54)||(44123579-44123608)
[»] chr8 (1 HSPs)
chr8 (25-58)||(28224201-28224234)
[»] chr7 (1 HSPs)
chr7 (25-54)||(3483958-3483987)
[»] chr1 (2 HSPs)
chr1 (25-54)||(5665997-5666026)
chr1 (27-55)||(25421549-25421577)
[»] chr5 (1 HSPs)
chr5 (28-68)||(22369642-22369682)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 32149144 - 32149304
Alignment:
Q  27 gctagggtgggagagcttgataggtctcccacaataagcaagcgagaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacacc 126  Q
    ||||| |||||||||||||||||||||||||   | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32149144 gctagtgtgggagagcttgataggtctcccatcgtgagcaagcgaaaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacacc 32149243  T
Q  127 aacaacaccggatactttttaattctcgctttgttctctcttctccatcttcaacctgctt 187  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  32149244 aacaacagcggatattttttaattctcgctttgttctctcttctccatcttcaacatgctt 32149304  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 1173862 - 1174017
Alignment:
Q  27 gctagggtgggagagcttgataggtctcccacaataagcaagcgagaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacacc 126  Q
    ||||||||||||||||||||||||||||||||  | |||||| || ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  1173862 gctagggtgggagagcttgataggtctcccaccgtgagcaagtgaaaaatataacttttgacggtcatatattaaaattctatgactgttaacatacacc 1173961  T
Q  127 aacaacaccggatactttttaattctcgctttgttctctcttctccatcttcaacct 183  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1173962 aacaaca-cggatactttttaattctcactttgttctctcttctccatcttcaacct 1174017  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Original strand, 9034006 - 9034036
Alignment:
Q  28 ctagggtgggagagcttgataggtctcccac 58  Q
    |||||||||||||||||||||||||||||||    
T  9034006 ctagggtgggagagcttgataggtctcccac 9034036  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 41735883 - 41735843
Alignment:
Q  28 ctagggtgggagagcttgataggtctcccacaataagcaag 68  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  41735883 ctagggtgggagagcttgataggtctctcaccataggcaag 41735843  T

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Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 41727108 - 41727249
Alignment:
Q  46 ataggtctcccacaataagcaagcgagaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacaccaacaacaccggatactttt 145  Q
    |||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  41727108 ataggtctcccaccgtgagcaagcgaaaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacaccaacaacaccatatactttt 41727207  T
Q  146 taattctcgctttgttctctcttctccatcttcaacctgctt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41727208 taattctcgctttgttctctcttctccatcttcaacctgctt 41727249  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 12846024 - 12846053
Alignment:
Q  25 aggctagggtgggagagcttgataggtctc 54  Q
    ||||||||||||||||||||||||||||||    
T  12846024 aggctagggtgggagagcttgataggtctc 12846053  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 44123608 - 44123579
Alignment:
Q  25 aggctagggtgggagagcttgataggtctc 54  Q
    ||||||||||||||||||||||||||||||    
T  44123608 aggctagggtgggagagcttgataggtctc 44123579  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 28224201 - 28224234
Alignment:
Q  25 aggctagggtgggagagcttgataggtctcccac 58  Q
    ||||||||||||||||||||||||||||| ||||    
T  28224201 aggctagggtgggagagcttgataggtcttccac 28224234  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 3483958 - 3483987
Alignment:
Q  25 aggctagggtgggagagcttgataggtctc 54  Q
    ||||||||||||||||||||||||||||||    
T  3483958 aggctagggtgggagagcttgataggtctc 3483987  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 5665997 - 5666026
Alignment:
Q  25 aggctagggtgggagagcttgataggtctc 54  Q
    ||||||||||||||||||||||||||||||    
T  5665997 aggctagggtgggagagcttgataggtctc 5666026  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 25421549 - 25421577
Alignment:
Q  27 gctagggtgggagagcttgataggtctcc 55  Q
    |||||||||||||||||||||||||||||    
T  25421549 gctagggtgggagagcttgataggtctcc 25421577  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 22369642 - 22369682
Alignment:
Q  28 ctagggtgggagagcttgataggtctcccacaataagcaag 68  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  22369642 ctagggtgggagagcttgataggtctctcaccataggcaag 22369682  T

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