View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242R-Insertion-2 (Length: 1015)
Name: NF2242R-Insertion-2
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242R-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 9 - 516
Target Start/End: Original strand, 32260446 - 32260953
Alignment:
| Q |
9 |
gattgcacgcagcacaccagttgggaaaccagtaaaacaaatgtatgttgtgtttattcttcttggtgctttagttatggctggtattactgacatgatt |
108 |
Q |
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| T |
32260446 |
gattgcacgcagcacaccagttgggaaaccagtaaaacaaatgtatgttgtgtttattcttcttggtgctttagttatggctgctattactgacatgatt |
32260545 |
T |
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| Q |
109 |
gggctaacatttcttattggaccattgatttggggtttgattattccgagtggaccccctttagggacaacattggttgaaaagtgtgaacttatcatct |
208 |
Q |
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| T |
32260546 |
gggctaacatttcttattggaccattgatttggggtttgattattccgagtggaccccctttagggacaacattggttgaaaagtgtgaacttatcatct |
32260645 |
T |
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| Q |
209 |
cagaatttttgttacctttcttctttgtttatgttggcatgaccacaaatttggctgcacttgaggattggcgagaatgtataactatgcaacttatctt |
308 |
Q |
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| T |
32260646 |
cagaatttttgttacctttcttctttgtttatgttggcatgaccacaaatttggctgcacttgaggattggcgagaatgtataactatgcaacttatctt |
32260745 |
T |
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| Q |
309 |
ctttgccggagacatagcaaaggtggttgcttgtgtgttggtttctatgatatataacatcaagcccaaacatggcacagtgcttggcctcatgttgaac |
408 |
Q |
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| T |
32260746 |
ctttgccggagacatagcaaaggtggttgcttgtgtgttggtttctatgatatataacatcaagcccaaacatggcacagtgcttggcctcatgttgaac |
32260845 |
T |
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| Q |
409 |
atcaagggcatacctcaccttataacctttattaaattgcaccaaatcaaggtacgcaatagtttaaatacttaattaatcttatatatcacatattgga |
508 |
Q |
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| T |
32260846 |
atcaagggcatacctcaccttataacctttattaaattgcaccaaatcaaggtacgcaatagtttaaatacttaattaatcttatatatcacatattgaa |
32260945 |
T |
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| Q |
509 |
tccatcgt |
516 |
Q |
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| T |
32260946 |
tccatcgt |
32260953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 518 - 1004
Target Start/End: Original strand, 32260998 - 32261490
Alignment:
| Q |
518 |
ggaataaatgttagtatgttaattgtttgtatattagtattcnnnnnnngcaagacttgaaccctgaacctttaactcttaaactctttttaatccttta |
617 |
Q |
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| T |
32260998 |
ggaataaatgttagtatgttaattgtttgtatattagtattctttttttgcaagacttgaaccctgaacctttaactcttaaactctttttaatccttta |
32261097 |
T |
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| Q |
618 |
gatatcaattgagttatccaaccccaaactatgtatatgttgtctttaattttacctttgaccctatttgtattttatagttttacacaacaaactaaca |
717 |
Q |
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| T |
32261098 |
gctatcaattgagttatccaaccccaaactatgtatatgttgtctttaattttacctttgatcctatttgtattttatagttttacacaacaaactaaca |
32261197 |
T |
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| Q |
718 |
aattaactttatgtttgtagctaatggatgatgaaacattgagtcacttgatgataggtgtggtggttacaactgcaatcatcatacccctcattaaatt |
817 |
Q |
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| T |
32261198 |
aattaactttatgtttgtagctaatggatgatgaaacattgagtcacttgatgataggtgtggtggttacaactgcaatcatcacacccctcattaaatt |
32261297 |
T |
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| Q |
818 |
gttatacaagcatcgtcctcgagtcttaagttcatcaagcatatttgatgaagaaatgagaacaatccaaaacactccaagaaattcagagtttcgcatt |
917 |
Q |
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| T |
32261298 |
gttatacaagcatcgtcctcgagtattaagttcatcaagcatatttgatgaagaaatgagaacaatccaaaacactccaagaaattcagagtttcgcatt |
32261397 |
T |
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| Q |
918 |
gttacttgtttacatagcgaa-gaaacgttcgtggcatgactgccctagtg--aatttgca--ccaattcaagaaagt-ccttatgtgtcttt |
1004 |
Q |
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| T |
32261398 |
gttacttgtttacatagtgaaggaaacgttcgtggcatgactgccctagtggaaatttgcaacccaattcaagaaagtcccttatgtgtcttt |
32261490 |
T |
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