View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242R-Insertion-21 (Length: 127)
Name: NF2242R-Insertion-21
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242R-Insertion-21 |
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Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 5680256 - 5680292
Alignment:
| Q |
9 |
cttcttccattggtgtcatgcaccaataataatcagg |
45 |
Q |
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| T |
5680256 |
cttcttccattggtgtcatgcaccaataataatcagg |
5680292 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 5689606 - 5689642
Alignment:
| Q |
9 |
cttcttccattggtgtcatgcaccaataataatcagg |
45 |
Q |
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|||||||||||||| ||||||||||| |||||||||| |
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| T |
5689606 |
cttcttccattggtctcatgcaccaaaaataatcagg |
5689642 |
T |
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