View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2242R-Insertion-22 (Length: 119)

Name: NF2242R-Insertion-22
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2242R-Insertion-22
NF2242R-Insertion-22
[»] scaffold0009 (2 HSPs)
scaffold0009 (9-119)||(174883-174993)
scaffold0009 (9-119)||(180396-180506)


Alignment Details
Target: scaffold0009 (Bit Score: 78; Significance: 8e-37; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 78; E-Value: 8e-37
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 174883 - 174993
Alignment:
Q  9 gctagaacaatcattggtcattgtataatggtttaataccnnnnnnnttactgatcgtattatgatagtttaaacttgatttttgtaaaagtctcctaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  174883 gctagaacaatcattggtcattgtataatggtttaataccaaaaaaattattgatcgtattatgatagtttaaacttgatttttgtaaaagtcttctaga 174982  T
Q  109 aaagttggccc 119  Q
    |||||||||||    
T  174983 aaagttggccc 174993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 78; E-Value: 8e-37
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 180396 - 180506
Alignment:
Q  9 gctagaacaatcattggtcattgtataatggtttaataccnnnnnnnttactgatcgtattatgatagtttaaacttgatttttgtaaaagtctcctaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  180396 gctagaacaatcattggtcattgtataatggtttaataccaaaaaaattattgatcgtattatgatagtttaaacttgatttttgtaaaagtcttctaga 180495  T
Q  109 aaagttggccc 119  Q
    |||||||||||    
T  180496 aaagttggccc 180506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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