View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2242R-Insertion-3 (Length: 811)
Name: NF2242R-Insertion-3
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242R-Insertion-3 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 642; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 73 - 811
Target Start/End: Original strand, 30759227 - 30759965
Alignment:
| Q |
73 |
tcattggatcccctagaccatttagagcactattggacctaagacccattagatctccatcagcttcaatatctttgttttgnnnnnnnatggtggttag |
172 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
30759227 |
tcattggaccccctagaccatttagagcaccattggacctaagacccataagatctccatcagcttcagtatctttgttttgtttttttatgcgggttag |
30759326 |
T |
|
| Q |
173 |
gtggttatttaccttcctattaaaaggaggtggttcttcacctacatctccattctttctcttaacacaaactttcttcaaatcatgttcattaccttgg |
272 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30759327 |
gtggttatttaccttcctattaaaagaaggtggttcttcacctacatctccattctttctcttaacacaaactttcttcaaatcatgttcattaccttgg |
30759426 |
T |
|
| Q |
273 |
tcttttttgaattcagatccttttttatccttatcctcctcagtaacttgttcaatgatcattgaatcaaaaacaaatttccaagattctatctgaattt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30759427 |
tcttttttgaattcagatccttttttatccttatcctcctcagtaacttgttgaatgatcattgaatcaaaaacaaatttccaagattccatctgaattt |
30759526 |
T |
|
| Q |
373 |
tgatgacttctttgttattttgatgtttaatgaaacaagctttatgtataaaaaacacatggaagccttcctccaacaactgaggaacacttaaaacact |
472 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30759527 |
tgataacttctttgttattttgatgtttaatgaaacaagctttatgtataaaaaacacatggaagccttcctccaacaactgaggaacacttaaaacact |
30759626 |
T |
|
| Q |
473 |
tgaagtaagatttggaacatataaaacattcaaaattagtttcaaacctgagcgatttctaattgtaattgttccgatgccttctacctcaataggtgct |
572 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30759627 |
tgaagtaagattgggaacatataaaacattcaaaattagtttcaaacctgagtgatttctaattgtaattgttccaatgccttctacctcaataggtgct |
30759726 |
T |
|
| Q |
573 |
ccattcgcaactataaagttataagaaatagcagttttgttgagctctttgaaaaagtttcgatcacaagtcatgtggtgtgtggcaccactgtcgatat |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30759727 |
ccattcgcaactataaagttataagaaatagcagttttgttgagctctttgaaaaagtttcgatcataagtcatgtggtgtgtggcaccactgtcgatat |
30759826 |
T |
|
| Q |
673 |
gccaaaagtttgagggtattttggttgtaagacctgacgctgcaagtagttgttcctttttatcttcctattgcaatcttcacttatgggtattaaatta |
772 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
30759827 |
gccaaaagtttgagggtattttggttgtaagacctgacattgcaagtagttgttcctttttatcttcctattgaaatcttcacttatgggtaataaatta |
30759926 |
T |
|
| Q |
773 |
gagtagtttcaattacaaatgattaatttgatatgaaac |
811 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30759927 |
gagtagtttcagttacaaatgattaatttgatatgaaac |
30759965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 73 - 744
Target Start/End: Original strand, 30748972 - 30749643
Alignment:
| Q |
73 |
tcattggatcccctagaccatttagagcactattggacctaagacccattagatctccatcagcttcaatatctttgttttgnnnnnnnatggtggttag |
172 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| | || |||||||||| |||| |||||| |
|
|
| T |
30748972 |
tcattggaccccctagaccatttagagcatcattggacctaagacccattagatcaccatcatcttgagtacctttgttttgtttttttatgggggttag |
30749071 |
T |
|
| Q |
173 |
gtggttatttaccttcctattaaaaggaggtggttcttcacctacatctccattctttctcttaacacaaactttcttcaaatcatgttcattaccttgg |
272 |
Q |
| |
|
| ||||| | ||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
30749072 |
gaggttaatcaccttcctaataaaagaaggtggttcttcacctacatcttcattctttctcttaacacaaactttcttcaaatcctgtgcatcaccttgg |
30749171 |
T |
|
| Q |
273 |
tcttttttgaattcagatccttttttatccttatcctcctcagtaacttgttcaatgatcattgaatcaaaaacaaatttccaagattctatctgaattt |
372 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
30749172 |
tcttttttgaattcagatcctttcttatccttatcctgatcagtaacttgttcaatgatcattgaatctaaaacaaatttcttggattccatctgaattt |
30749271 |
T |
|
| Q |
373 |
tgatgacttctttgttattttgatgtttaatgaaacaagctttatgtataaaaaacacatggaagccttcctccaacaactgaggaacacttaaaacact |
472 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
30749272 |
tgataacttctttgttgttttgatgtttaatctcacaagaattatgtataaaaaacacatggtatccttcctccaacaattgaggaacgcttaaaagact |
30749371 |
T |
|
| Q |
473 |
tgaagtaagatttggaacatataaaacattcaaaattagtttcaaacctgagcgatttctaattgtaattgttccgatgccttctacctcaataggtgct |
572 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||||||||||||||||||| ||| | ||||||||| |||||| | ||||||||||||||| |||||| |
|
|
| T |
30749372 |
tgaagtaagtttgggaacataaaaaacattcaaaattagtttcaaacctgagtgatgtttaattgtaactgttccaaagccttctacctcaatgggtgct |
30749471 |
T |
|
| Q |
573 |
ccattcgcaactataaagttataagaaatagcagttttgttgagctctttgaaaaagtttcgatcacaagtcatgtggtgtgtggcaccactgtcgatat |
672 |
Q |
| |
|
|||||| ||||||||| |||| |||||||| ||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30749472 |
ccattcccaactataatgttacaagaaataatagttttgttaagctctttgaaaaggcttcgatcataagtcatgtggtgtgtggcaccactgtcgatat |
30749571 |
T |
|
| Q |
673 |
gccaaaagtttgagggtattttggttgtaagacctgacgctgcaagtagttgttcctttttatcttcctatt |
744 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
30749572 |
accaaaagtttgagggtattttggttgtaagacctgacattgcaagtagttgttcctttttctcttcctatt |
30749643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 578
Target Start/End: Complemental strand, 32531628 - 32531496
Alignment:
| Q |
446 |
caacaactgaggaacacttaaaacacttgaagtaagatttggaacatataaaacattcaaaattagtttcaaacctgagcgatttctaattgtaattgtt |
545 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||| || ||| |||||||||||||| ||||| |||| |||||||| || || ||| | || ||| |
|
|
| T |
32531628 |
caacaactgaggaacacttaaaagactttgattaagtttaggagcatataaaacattcgaaatttgtttataacctgagtgacttttaactaaaactgtc |
32531529 |
T |
|
| Q |
546 |
ccgatgccttctacctcaataggtgctccattc |
578 |
Q |
| |
|
|| ||||||||||| ||||| |||| |||||| |
|
|
| T |
32531528 |
ccaatgccttctacttcaatgtgtgcaccattc |
32531496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 486 - 584
Target Start/End: Complemental strand, 19931270 - 19931172
Alignment:
| Q |
486 |
ggaacatataaaacattcaaaattagtttcaaacctgagcgatttctaattgtaattgttccgatgccttctacctcaataggtgctccattcgcaact |
584 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |||| ||| | || |||||| ||||||||| | |||| |||||||||||||||| |
|
|
| T |
19931270 |
ggaacatataaaacattcaaaactagtttcgaacctgagtgattcttaaatacaactgttccaatgccttctgctgtaatatttgctccattcgcaact |
19931172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 486 - 584
Target Start/End: Complemental strand, 28402314 - 28402216
Alignment:
| Q |
486 |
ggaacatataaaacattcaaaattagtttcaaacctgagcgatttctaattgtaattgttccgatgccttctacctcaataggtgctccattcgcaact |
584 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |||| ||| | || |||||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
28402314 |
ggaacatataaaacattcaaaactagtttcgaacctgagtgattcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaact |
28402216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 37709107 - 37709153
Alignment:
| Q |
193 |
taaaaggaggtggttcttcacctacatctccattctttctcttaaca |
239 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
37709107 |
taaaagaaggtggttcttcacttacatcttcattctttctcttaaca |
37709153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University