View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242R-Insertion-4 (Length: 807)
Name: NF2242R-Insertion-4
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242R-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 182 - 807
Target Start/End: Original strand, 7101740 - 7102354
Alignment:
| Q |
182 |
attacaatatattttttacattctttcgtaatgctcccaaatttcgtgatgtcatgaaaacctctatggatgtagtccaccatctccttcgtaccaaggt |
281 |
Q |
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| T |
7101740 |
attacaatattttttttacattctttcataatgctcccaaatttcgtgatgtcatgaaaagctctatggatttagtccaccatctccttcgtaccaaggt |
7101839 |
T |
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| Q |
282 |
caaaataacagtttgcagccgtaaatcatgaactcaagtaatagcatagttaagactcaaagagtgagccaaagagttttggcaagaagaaaactcgtga |
381 |
Q |
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| T |
7101840 |
caaaataaaagtttgcagctgtaaatcatgaactcaagtaatagcatagttaagactcaaagagtgagccaaagagttttagcaagaagaaaactcgtga |
7101939 |
T |
|
| Q |
382 |
gttcatcttgaatgcccatatccacgtcctctcgcctttgaatatcgatggaaaccccata-ttcaactctctaaacatgaggcttatccatcaaaatca |
480 |
Q |
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| T |
7101940 |
gttcatcttgaatgcccatatccacgtc--ctcgcctttgaatatcgatggaaaccccatatttcaactctctaaacatgaggcttatccatcaaaatca |
7102037 |
T |
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| Q |
481 |
tagtaggtagttatgttttcatgcctaatataaactggttattaacttttgaaaac-nnnnnnnnataaacttttttctacaaacttttgatgtcaactt |
579 |
Q |
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| T |
7102038 |
tagtaggtagttatgttttcatgcctaatataaactgg---ttaacttttgaaaactttttttttataaacttttttttacaaacttttgatgtcaactt |
7102134 |
T |
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| Q |
580 |
aaaatgtagacgatgtgttccaatacttaaatttaaaaataaacaccataatctttc---nnnnnnnnnnnnnnnnnnntatacacagttatggccgcaa |
676 |
Q |
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| T |
7102135 |
aaaatgtagacgatgtgttccaatacttaaatttaaaaataaacaccataatctttcaaaaaaaaaaaaagtaaaaaaatatacatcgttatggccgcaa |
7102234 |
T |
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| Q |
677 |
cccaatttgttatagtttattaccctttcatccaccaatttggycgcarattaatcccctcatttttagcaatttgtattgtacgaatatagtctattaa |
776 |
Q |
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| T |
7102235 |
cccaatttgttatagtttattatcc-ttcatccaccaatttggtcgcagatcaatcccctc----------atttgtattgtatcaatatagtctattaa |
7102323 |
T |
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| Q |
777 |
-ttaaatgaatatcattttatttttaaacgct |
807 |
Q |
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| T |
7102324 |
tttaaatgaatatca-tttatttttaaacgct |
7102354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 7101499 - 7101675
Alignment:
| Q |
9 |
aaagtaaggagtttataactgaatttatagtttatgcttgagcatgatgaatgacatgggagtgtttcttttacggagaataagcttatagcatgtcatt |
108 |
Q |
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| T |
7101499 |
aaagtaaggactttataactaaatttatagtttatgcttgagcatggtgaatgacatgggagtgtttcttttacagagaataagcttatagcatgtcatt |
7101598 |
T |
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| Q |
109 |
agaaattaatgtgtaaataaatggcggaacatcactataagtgtgggagatagttgataatgtgactacccacatta |
185 |
Q |
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| T |
7101599 |
agaaattaaagtgtaaataaatggcggaacatcactataagtgtgggagatagttgataatgcgactatccacatta |
7101675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 40435662 - 40435535
Alignment:
| Q |
211 |
aatgctcccaaatttcgtgatgtcatgaaaacctctatggatgtagtccaccatctccttcgtaccaaggtcaaaat-aacagtttgcagccgtaaatca |
309 |
Q |
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| T |
40435662 |
aatgctcctaaatttcacgatgtcattacgacctctatgaaagtagtccaccatct---ttgaatcatgatcaaaattaacattttgcagttgtaaatca |
40435566 |
T |
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| Q |
310 |
tgaactcaagtaatagcatagttaagactca |
340 |
Q |
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| T |
40435565 |
tgaaccaaaataatagcatagttaagactca |
40435535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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