View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242R-Insertion-8 (Length: 668)
Name: NF2242R-Insertion-8
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242R-Insertion-8 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 524
Target Start/End: Complemental strand, 12812651 - 12812127
Alignment:
| Q |
8 |
atcatgattcttgcatattggtgattaaaattaaggaaccaatttttctacaaaaatattggtcaaaacctgcagaatttcatcatcactattgcaacca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12812651 |
atcatgattcttgcatattggtgattaaaattaaggaaccaatttttctacaaaaatattggtcaaaacctgcagaatttcatcatcactattgcaacca |
12812552 |
T |
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| Q |
108 |
gactcatcagaaggtggttagtacatttccacaaatactgctatctgatgttgaagtctaaagactcatcacat-ggcgcgtgaacacacacatgcgcgt |
206 |
Q |
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| T |
12812551 |
gactcatcagaaggtggttagtacatttccacaaatactgctatctgatgttgaagtctaaagactcatcacatgggcgcgtgaacacacacaggcgcgt |
12812452 |
T |
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| Q |
207 |
gactcattc------acaccttatgtaatttccttgccctaaactgcaacaatttaagtatgcgtcaatagaaaaataatatgatagtaacttataactt |
300 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
12812451 |
gactcattcatacatacaccttatataatttccttgccctaaactgcaacaattaaagtatgcatcaagagaaaaataatatgatagtaacttataactc |
12812352 |
T |
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| Q |
301 |
atataagagcccacattatactataattaaataggaaaaagagaataatataaaaattaagaataatttttgtttccannnnnnngt-nnnnnnngttct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
12812351 |
atataagagcccacattatactataattaaataggaaaaagagaataatataaaaattaagaataatttttgtttccatttttttgtaaaaaaaagttct |
12812252 |
T |
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| Q |
400 |
caagtgtgtgtgtccctttttatatagcacacaaactttcatttctcactacaaaaatttatattctctc--tcnnnnnnnccatattgcactaaatcac |
497 |
Q |
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| T |
12812251 |
caa--gtgtgtgtccctttttatatagcacacaaactttcatttctcactacaaaaatttatattctctctttttttttttccatattgcactaaatcac |
12812154 |
T |
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| Q |
498 |
tataaataaagttagagtttatttctt |
524 |
Q |
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| T |
12812153 |
tataaataaagttagagtttatttctt |
12812127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 12812044 - 12811983
Alignment:
| Q |
607 |
ccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctg |
668 |
Q |
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| T |
12812044 |
ccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctg |
12811983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 30642962 - 30642910
Alignment:
| Q |
616 |
aactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctg |
668 |
Q |
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| T |
30642962 |
aactttctcaaagagaagaaatggtttgctcaaaaaagcttatgaactgtctg |
30642910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 607 - 663
Target Start/End: Original strand, 28470206 - 28470262
Alignment:
| Q |
607 |
ccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaact |
663 |
Q |
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|||||| || ||||||||||||||||||||||||||||| || ||||| |||||||| |
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| T |
28470206 |
ccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaact |
28470262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 668
Target Start/End: Complemental strand, 47271190 - 47271133
Alignment:
| Q |
611 |
caggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctg |
668 |
Q |
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| T |
47271190 |
caggttactttctcaaagagaaggaatggtttaatcaagaaagcttatgaactttctg |
47271133 |
T |
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