View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2242R-Insertion-9 (Length: 568)

Name: NF2242R-Insertion-9
Description: NF2242R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2242R-Insertion-9
NF2242R-Insertion-9
[»] chr7 (39 HSPs)
chr7 (9-511)||(43203377-43203879)
chr7 (453-511)||(4106809-4106867)
chr7 (453-511)||(23358256-23358314)
chr7 (453-511)||(38781207-38781265)
chr7 (454-511)||(4107380-4107437)
chr7 (453-502)||(19630667-19630716)
chr7 (454-511)||(31770532-31770589)
chr7 (453-502)||(47570717-47570766)
chr7 (453-500)||(47250250-47250297)
chr7 (453-511)||(25112246-25112304)
chr7 (453-511)||(40058309-40058367)
chr7 (506-568)||(43203293-43203355)
chr7 (457-511)||(44084011-44084065)
chr7 (453-502)||(2146716-2146765)
chr7 (506-555)||(25546354-25546403)
chr7 (454-502)||(8439158-8439206)
chr7 (454-502)||(11355903-11355951)
chr7 (453-511)||(25546274-25546332)
chr7 (453-511)||(38033800-38033858)
chr7 (453-511)||(48146824-48146882)
chr7 (506-555)||(2146636-2146685)
chr7 (454-495)||(7162790-7162831)
chr7 (457-502)||(15634882-15634927)
chr7 (453-502)||(41183895-41183944)
chr7 (511-555)||(31770616-31770660)
chr7 (506-554)||(47250330-47250378)
chr7 (512-555)||(27915666-27915709)
chr7 (512-555)||(47557781-47557824)
chr7 (506-556)||(40058237-40058287)
chr7 (506-555)||(4106738-4106787)
chr7 (453-502)||(5772818-5772867)
chr7 (282-359)||(7168640-7168717)
chr7 (506-555)||(23358185-23358234)
chr7 (454-511)||(39513983-39514040)
chr7 (506-555)||(44083940-44083989)
chr7 (317-357)||(18221543-18221583)
chr7 (454-502)||(31288224-31288272)
chr7 (454-502)||(47557861-47557909)
chr7 (454-502)||(48444152-48444200)
[»] chr3 (35 HSPs)
chr3 (275-445)||(43892054-43892225)
chr3 (275-440)||(47105827-47105993)
chr3 (275-383)||(14737295-14737403)
chr3 (453-511)||(51665924-51665982)
chr3 (453-511)||(7824453-7824511)
chr3 (453-511)||(29689481-29689539)
chr3 (453-511)||(43247649-43247707)
chr3 (453-511)||(54158337-54158395)
chr3 (453-502)||(3112994-3113043)
chr3 (457-511)||(9349679-9349733)
chr3 (453-511)||(36228993-36229051)
chr3 (453-511)||(54151680-54151738)
chr3 (454-500)||(55320400-55320446)
chr3 (329-425)||(29210844-29210941)
chr3 (453-502)||(52500918-52500967)
chr3 (454-502)||(4601505-4601553)
chr3 (460-511)||(55018040-55018091)
chr3 (506-556)||(4601424-4601474)
chr3 (453-502)||(28844584-28844634)
chr3 (511-557)||(32001508-32001554)
chr3 (506-555)||(7824533-7824582)
chr3 (506-555)||(29689561-29689610)
chr3 (506-555)||(51666004-51666053)
chr3 (506-555)||(54151760-54151809)
chr3 (506-555)||(54158266-54158315)
chr3 (503-555)||(1778851-1778903)
chr3 (512-556)||(42392890-42392934)
chr3 (453-495)||(41377666-41377708)
chr3 (453-511)||(42392804-42392862)
chr3 (506-556)||(43247729-43247779)
chr3 (506-555)||(29750621-29750670)
chr3 (454-502)||(475281-475328)
chr3 (454-502)||(32001424-32001472)
chr3 (512-556)||(35461564-35461608)
chr3 (454-502)||(43775303-43775351)
[»] chr2 (38 HSPs)
chr2 (275-440)||(16468333-16468499)
chr2 (275-445)||(25391955-25392122)
chr2 (453-511)||(10639605-10639663)
chr2 (453-511)||(37197609-37197667)
chr2 (454-511)||(33083554-33083611)
chr2 (453-502)||(34460449-34460498)
chr2 (453-502)||(45125164-45125213)
chr2 (454-502)||(23839939-23839987)
chr2 (454-502)||(29659218-29659266)
chr2 (454-502)||(42578248-42578296)
chr2 (453-511)||(26605695-26605753)
chr2 (453-502)||(19537387-19537436)
chr2 (454-502)||(43778468-43778516)
chr2 (323-386)||(10748042-10748105)
chr2 (453-511)||(11459786-11459844)
chr2 (453-511)||(27137917-27137975)
chr2 (506-556)||(40786288-40786338)
chr2 (506-555)||(10639685-10639734)
chr2 (457-502)||(11708758-11708803)
chr2 (506-555)||(26605624-26605673)
chr2 (506-555)||(33083633-33083682)
chr2 (454-502)||(44181887-44181935)
chr2 (512-555)||(11459715-11459758)
chr2 (512-555)||(34234530-34234573)
chr2 (512-555)||(42578180-42578223)
chr2 (453-511)||(4851391-4851449)
chr2 (506-552)||(16654366-16654412)
chr2 (506-556)||(19048753-19048803)
chr2 (506-556)||(23839858-23839908)
chr2 (505-551)||(43684073-43684119)
chr2 (506-555)||(11708678-11708727)
chr2 (454-511)||(19048825-19048882)
chr2 (506-555)||(19537307-19537356)
chr2 (506-555)||(19816220-19816269)
chr2 (506-555)||(34460369-34460418)
chr2 (454-511)||(39831444-39831501)
chr2 (506-555)||(45125244-45125293)
chr2 (453-501)||(19816301-19816349)
[»] chr5 (25 HSPs)
chr5 (275-445)||(7274477-7274648)
chr5 (453-511)||(21018294-21018352)
chr5 (454-504)||(23262622-23262672)
chr5 (453-511)||(29265946-29266004)
chr5 (453-511)||(31909384-31909442)
chr5 (453-511)||(32143413-32143471)
chr5 (453-511)||(35317696-35317754)
chr5 (453-511)||(4824938-4824996)
chr5 (453-511)||(13204028-13204086)
chr5 (453-498)||(12257440-12257485)
chr5 (454-502)||(2971064-2971112)
chr5 (504-555)||(30127894-30127945)
chr5 (511-557)||(32143486-32143532)
chr5 (457-499)||(40177707-40177749)
chr5 (506-555)||(13203957-13204006)
chr5 (506-554)||(4825018-4825066)
chr5 (457-501)||(6021073-6021117)
chr5 (507-555)||(38955228-38955276)
chr5 (453-500)||(21112131-21112178)
chr5 (512-555)||(35317782-35317825)
chr5 (506-555)||(1191619-1191668)
chr5 (511-556)||(12257355-12257400)
chr5 (514-555)||(27721431-27721472)
chr5 (454-502)||(2786351-2786398)
chr5 (511-555)||(9577045-9577089)
[»] chr1 (37 HSPs)
chr1 (275-386)||(44139675-44139786)
chr1 (276-386)||(23809423-23809533)
chr1 (275-393)||(26094896-26095014)
chr1 (453-511)||(28455945-28456003)
chr1 (453-511)||(32007145-32007203)
chr1 (453-511)||(41039302-41039360)
chr1 (453-511)||(45813010-45813068)
chr1 (454-511)||(5055788-5055845)
chr1 (453-502)||(41808282-41808331)
chr1 (454-502)||(48660102-48660150)
chr1 (454-511)||(20819-20876)
chr1 (453-502)||(192495-192544)
chr1 (453-502)||(41761410-41761459)
chr1 (454-502)||(13109850-13109898)
chr1 (453-500)||(11688345-11688392)
chr1 (506-557)||(28455872-28455923)
chr1 (455-502)||(35945877-35945924)
chr1 (506-556)||(20747-20797)
chr1 (506-556)||(32007073-32007123)
chr1 (453-511)||(39276421-39276479)
chr1 (329-425)||(7386662-7386759)
chr1 (511-556)||(29994467-29994512)
chr1 (506-555)||(41808202-41808251)
chr1 (506-555)||(48660022-48660071)
chr1 (506-554)||(35945798-35945846)
chr1 (454-509)||(35110099-35110154)
chr1 (506-556)||(5055867-5055917)
chr1 (511-553)||(21938944-21938986)
chr1 (506-552)||(29587255-29587301)
chr1 (453-502)||(26032881-26032930)
chr1 (453-498)||(29994382-29994427)
chr1 (506-555)||(41761490-41761539)
chr1 (458-511)||(50106200-50106253)
chr1 (454-502)||(778654-778702)
chr1 (454-502)||(3716442-3716490)
chr1 (454-502)||(7059547-7059595)
chr1 (323-363)||(39501117-39501157)
[»] chr4 (41 HSPs)
chr4 (453-511)||(23417482-23417540)
chr4 (454-511)||(28798388-28798445)
chr4 (453-511)||(26424857-26424915)
chr4 (453-511)||(34739351-34739409)
chr4 (453-511)||(45874126-45874184)
chr4 (454-511)||(1174022-1174079)
chr4 (453-502)||(12735511-12735560)
chr4 (454-511)||(43139906-43139963)
chr4 (454-511)||(53457895-53457952)
chr4 (453-511)||(238457-238515)
chr4 (279-409)||(43733858-43733988)
chr4 (453-502)||(12867921-12867970)
chr4 (454-511)||(18257400-18257457)
chr4 (506-555)||(23710412-23710461)
chr4 (454-511)||(50347329-50347386)
chr4 (457-540)||(23532088-23532172)
chr4 (504-555)||(11277982-11278033)
chr4 (509-556)||(26424939-26424986)
chr4 (323-386)||(42327928-42327991)
chr4 (506-557)||(55400226-55400277)
chr4 (453-511)||(19849502-19849560)
chr4 (506-556)||(19849582-19849632)
chr4 (506-556)||(34739279-34739329)
chr4 (454-500)||(55400310-55400356)
chr4 (506-555)||(1173951-1174000)
chr4 (454-511)||(1966621-1966678)
chr4 (506-555)||(2864827-2864876)
chr4 (506-555)||(18257329-18257378)
chr4 (453-502)||(54768431-54768480)
chr4 (506-555)||(54768511-54768560)
chr4 (455-511)||(55214723-55214779)
chr4 (512-555)||(53457824-53457867)
chr4 (517-555)||(12767087-12767125)
chr4 (506-555)||(238537-238586)
chr4 (506-555)||(28798467-28798516)
chr4 (511-556)||(32441168-32441213)
chr4 (506-555)||(43139985-43140034)
chr4 (511-555)||(19674013-19674057)
chr4 (454-502)||(29581044-29581091)
chr4 (454-502)||(31015062-31015110)
chr4 (463-511)||(39807915-39807963)
[»] scaffold1348 (2 HSPs)
scaffold1348 (453-511)||(861-919)
scaffold1348 (506-555)||(941-990)
[»] scaffold0119 (4 HSPs)
scaffold0119 (453-511)||(13950-14008)
scaffold0119 (453-511)||(19630-19688)
scaffold0119 (506-555)||(14030-14079)
scaffold0119 (506-555)||(19710-19759)
[»] scaffold0032 (2 HSPs)
scaffold0032 (453-511)||(56552-56610)
scaffold0032 (512-556)||(56480-56524)
[»] chr8 (43 HSPs)
chr8 (453-511)||(1339-1397)
chr8 (453-511)||(1078647-1078705)
chr8 (453-511)||(6602517-6602575)
chr8 (453-511)||(6677970-6678028)
chr8 (453-511)||(32333185-32333243)
chr8 (453-511)||(35779496-35779554)
chr8 (454-511)||(70523-70580)
chr8 (453-502)||(28817336-28817385)
chr8 (453-502)||(42192638-42192687)
chr8 (453-502)||(42885254-42885303)
chr8 (455-511)||(9292089-9292145)
chr8 (457-511)||(7813393-7813447)
chr8 (506-555)||(1078727-1078776)
chr8 (453-502)||(7792741-7792790)
chr8 (506-559)||(12534797-12534850)
chr8 (317-409)||(5896315-5896407)
chr8 (454-502)||(13891170-13891218)
chr8 (323-386)||(9180756-9180819)
chr8 (453-495)||(10963241-10963283)
chr8 (506-555)||(6602597-6602646)
chr8 (506-555)||(6678050-6678099)
chr8 (506-555)||(7792661-7792710)
chr8 (506-555)||(28817256-28817305)
chr8 (457-502)||(31532128-31532173)
chr8 (506-555)||(32333114-32333163)
chr8 (506-555)||(42192718-42192767)
chr8 (454-498)||(29425435-29425479)
chr8 (512-555)||(70608-70651)
chr8 (323-386)||(11629492-11629555)
chr8 (455-502)||(20269610-20269657)
chr8 (455-502)||(21056239-21056286)
chr8 (506-557)||(35779576-35779627)
chr8 (506-557)||(40911219-40911270)
chr8 (453-511)||(4530981-4531039)
chr8 (299-416)||(8703352-8703470)
chr8 (506-555)||(4531061-4531110)
chr8 (506-551)||(39303313-39303358)
chr8 (454-502)||(39303389-39303438)
chr8 (514-555)||(42364788-42364829)
chr8 (454-511)||(45264640-45264697)
chr8 (511-555)||(10963324-10963368)
chr8 (323-363)||(34752738-34752778)
chr8 (515-555)||(45264727-45264767)
[»] chr6 (20 HSPs)
chr6 (453-511)||(35218639-35218697)
chr6 (453-511)||(33704287-33704345)
chr6 (453-502)||(21037370-21037419)
chr6 (323-386)||(10158980-10159043)
chr6 (453-511)||(33621565-33621623)
chr6 (453-502)||(4464207-4464256)
chr6 (511-556)||(21000691-21000736)
chr6 (506-555)||(33621494-33621543)
chr6 (506-555)||(33704216-33704265)
chr6 (454-502)||(29009650-29009698)
chr6 (513-555)||(14939148-14939190)
chr6 (506-556)||(28322931-28322981)
chr6 (454-495)||(16518508-16518549)
chr6 (454-511)||(19145541-19145598)
chr6 (454-511)||(28323003-28323060)
chr6 (511-556)||(35218712-35218757)
chr6 (511-555)||(2959149-2959193)
chr6 (454-498)||(11456057-11456101)
chr6 (454-498)||(24619079-24619123)
chr6 (454-502)||(28592128-28592176)
[»] scaffold0044 (2 HSPs)
scaffold0044 (453-500)||(9972-10019)
scaffold0044 (506-555)||(10052-10101)
[»] scaffold0352 (2 HSPs)
scaffold0352 (506-556)||(9022-9072)
scaffold0352 (454-502)||(8943-8991)
[»] scaffold0053 (1 HSPs)
scaffold0053 (454-511)||(22234-22291)
[»] scaffold0067 (1 HSPs)
scaffold0067 (506-556)||(34817-34867)
[»] scaffold0038 (2 HSPs)
scaffold0038 (506-556)||(114251-114301)
scaffold0038 (454-511)||(114323-114380)


Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Complemental strand, 43203879 - 43203377
Alignment:
Q  9 tctctcattctatttcatcatcaaactattacatcattatctttttcactctttactttaaggtgtatacaccattgaaagaagcacacaaaacattttt 108  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43203879 tctctcattctattacatcatcaaactatcacatcattatctttttcactctttattttaaggtgtatacaccattgaaagaagcacacaaaacattttt 43203780  T
Q  109 gaaattgatatgttgaaattatgtatcacctaccacgtagatcgtttattctttatttgggaggaaaaaagtttgaggttcttaaaaaataagttgtaat 208  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43203779 gaaattgatatgttgaaattatgtatcacctaccacatagatcgtttattctttatttgggaggaaaaaagtttgaggttcttaaaaaataagttgtaat 43203680  T
Q  209 gtttaatggagtattataacatttaattttgtctnnnnnnntataataaataaaagcaattaataagaaattggtgatttagtttcggaatgtaaaactc 308  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43203679 gtttaatggagtattataacatttaattttgtct-aaaaaatataataaataaaagcaattaataagaaattggtgatttagtttcggaatgtaaaactc 43203581  T
Q  309 ttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagagttgttttatctaatcctag-cc 407  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||    
T  43203580 tcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtatgactcataacattgctagagctgttctatctaatcctagccc 43203481  T
Q  408 ccatgttttttatgatgttcctactagcttgtactctcnnnnnnnggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgt 507  Q
    |||||| |||||||||||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||    
T  43203480 ccatgtcttttatgatgttcctactagcttgtactctctttttttggtcttatatgaagtgaaaatccactgtaaataaactcacacacaactgtaaggt 43203381  T
Q  508 cccg 511  Q
    ||||    
T  43203380 cccg 43203377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 4106867 - 4106809
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  4106867 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 4106809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 23358314 - 23358256
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  23358314 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 23358256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 38781207 - 38781265
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  38781207 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 38781265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 4107437 - 4107380
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  4107437 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 4107380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 19630667 - 19630716
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  19630667 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 19630716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 31770532 - 31770589
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  31770532 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 31770589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 47570717 - 47570766
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  47570717 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 47570766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 500
Target Start/End: Original strand, 47250250 - 47250297
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaact 500  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  47250250 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaact 47250297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 25112246 - 25112304
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||||| | ||||||    
T  25112246 ggtcttagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcccg 25112304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 40058367 - 40058309
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||||||| | ||||||    
T  40058367 ggtcttagatgaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccg 40058309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 568
Target Start/End: Complemental strand, 43203355 - 43203293
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagactactagcttgtac 568  Q
    |||||||||| |||||||||||||| |||||| |  || ||||||||||||||||||||||||    
T  43203355 gtcccgccttacaatttcggcatttgccagttcatctaggacttctagactactagcttgtac 43203293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 511
Target Start/End: Complemental strand, 44084065 - 44084011
Alignment:
Q  457 ttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  44084065 ttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 44084011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 2146765 - 2146716
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  2146765 ggtcttagatgaagtggtaatccactgaaaataaacccacacacaactgt 2146716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 25546354 - 25546403
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||||||||||||| || |||||||||||    
T  25546354 gtccggccttgcaatttcggcatttaccagttgagctaggacttctagac 25546403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 8439206 - 8439158
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  8439206 gtcttagatgaagtggtaatccactgaaaataaattcacacacaactgt 8439158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 11355951 - 11355903
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||||    
T  11355951 gtcttagatgaagtggtaatccactgaaattaaactcacacacaactgt 11355903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 25546274 - 25546332
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| || |||||| || ||||||||||||||||||| | ||||||    
T  25546274 ggtcttagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccg 25546332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 38033858 - 38033800
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||| |||||||||||| | ||||||| |||||||||||||||||||||| | ||||||    
T  38033858 ggtcatagatgaagtggtactccactgaaaataaactcacacacaactgtgaggtcccg 38033800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 48146882 - 48146824
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| |||||| || |||| ||||||||||||||||| | ||||||    
T  48146882 ggtcttagatgaagtggtaatccaatgaaaattaactcacacacaactgtgaggtcccg 48146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 2146685 - 2146636
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  2146685 gtccggccttgcaatttcggcattttccagttgagctaggacttctagac 2146636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 495
Target Start/End: Original strand, 7162790 - 7162831
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacaca 495  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  7162790 gtcttagatgaagtggtaatccactgaaaataaactcacaca 7162831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 15634882 - 15634927
Alignment:
Q  457 ttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||||    
T  15634882 ttagatgaagtggtaatctactgaaaataaactcacacacaactgt 15634927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 41183944 - 41183895
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||  ||||||||| ||||||||||||||| ||||||    
T  41183944 ggtcttagatgaagtgataatccactgaaaataaactcacacataactgt 41183895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 555
Target Start/End: Original strand, 31770616 - 31770660
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||||||||||||||||| ||||||||| || |||||||||||    
T  31770616 gccttgcaatttcggcatttgccagttgagctaggacttctagac 31770660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 506 - 554
Target Start/End: Original strand, 47250330 - 47250378
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctaga 554  Q
    |||| |||||||||||||||||||| ||||||||| || ||||||||||    
T  47250330 gtccggccttgcaatttcggcatttgccagttgagctaggacttctaga 47250378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 27915666 - 27915709
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||||||||| |||||||||||||||| || |||||||||||    
T  27915666 ccttgcaatttcagcatttaccagttgagttaggacttctagac 27915709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Complemental strand, 47557824 - 47557781
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||| ||||||||||||||||||||||| || |||||||||||    
T  47557824 ccttgtaatttcggcatttaccagttgagttaggacttctagac 47557781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 40058287 - 40058237
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||| ||||||| ||||||||| || ||||||||||||    
T  40058287 gtccggccttgcaattttggcatttgccagttgagttaggacttctagact 40058237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 4106787 - 4106738
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||| | || |||||||||||    
T  4106787 gtccggccttgcaatttcggcatttgccagttgggctaggacttctagac 4106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 5772818 - 5772867
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||| ||||||||| || |||||| || |||||||||||||||||||    
T  5772818 ggtcttaaatgaagtggtaaaccactgaaattaaactcacacacaactgt 5772867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 7168640 - 7168717
Alignment:
Q  282 gtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaa 359  Q
    ||||| ||||||  |||||||||| ||| |||||||||||  | |||| | ||| |||||||||| ||||||||||||    
T  7168640 gtgatatagtttttgaatgtaaaattctcttgttaagtaattcagactttatagcgtcgtttgttcggagacaagcaa 7168717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 23358234 - 23358185
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| ||||||||||||||| |||| ||||||||| || |||||||||||    
T  23358234 gtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 23358185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 39513983 - 39514040
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||| ||||||||||| ||||||| | || |||||||||||| |||||||| ||||||    
T  39513983 gtctcagatgaagtggtaatccaccgaaattaaactcacacataactgtaaggtcccg 39514040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 44083989 - 44083940
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||| ||||||| ||||||||| || |||||||||||    
T  44083989 gtccggccttgcaattttggcatttgccagttgagctaggacttctagac 44083940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 18221583 - 18221543
Alignment:
Q  317 agtaaccccgactatgtagtgtcgtttgttaggagacaagc 357  Q
    ||||| ||||||||||||||||||||||||| ||| |||||    
T  18221583 agtaatcccgactatgtagtgtcgtttgttaagaggcaagc 18221543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 31288224 - 31288272
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| || |||||| || |||||| ||||||||||||    
T  31288224 gtcttagatgaagtggtaaaccactgaaattaaacttacacacaactgt 31288272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 47557909 - 47557861
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| || |||||| || |||||||||| ||||||||    
T  47557909 gtcttagatgaagtggtaaaccactgaaattaaactcacatacaactgt 47557861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 48444152 - 48444200
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||| ||||| || |||||| ||||||||||||    
T  48444152 gtcttagatgaagtggtaattcactgaaattaaacttacacacaactgt 48444200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 43892054 - 43892225
Alignment:
Q  275 gaaattggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcata 374  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  43892054 gaaattggtgatttagtttcggaatgtaaaactctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcata 43892153  T
Q  375 acattgctagagttgttttatctaatcctagccc-catgttttttatgatgttcctactagcttgtactctc 445  Q
    |||||||||||| || | |||||||||||| ||| ||| | |||||||||||||||||||| ||||||||||    
T  43892154 acattgctagagctgctctatctaatcctaaccctcatctcttttatgatgttcctactagtttgtactctc 43892225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 275 - 440
Target Start/End: Original strand, 47105827 - 47105993
Alignment:
Q  275 gaaattggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcata 374  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||| |||||| |||| ||||||    
T  47105827 gaaattgatgatttagtttcagaatgtaaaactctcttgttaagtaatcccgactatgtagtgtcgtttgtgaggaggcaaacaaataatgtggctcata 47105926  T
Q  375 acattgctagagttgttttatctaatcctag-ccccatgttttttatgatgttcctactagcttgta 440  Q
    ||||||| |||| || | |||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  47105927 acattgcaagagctgctctatccaatcctagcccccatgttttttatgatgttcctactaccttgta 47105993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 275 - 383
Target Start/End: Original strand, 14737295 - 14737403
Alignment:
Q  275 gaaattggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcata 374  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||| |||| ||||||||||||||| ||||||    
T  14737295 gaaattggtgatttagtttcggaatgtaaaactctcttgttaagtaatgccgactatgtagtttcgtttgtttggaggcaagcaaatagtgtggctcata 14737394  T
Q  375 acattgcta 383  Q
    |||||||||    
T  14737395 acattgcta 14737403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 51665924 - 51665982
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  51665924 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggtcccg 51665982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 7824453 - 7824511
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  7824453 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 7824511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 29689481 - 29689539
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  29689481 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 29689539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 43247649 - 43247707
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  43247649 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 43247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 54158395 - 54158337
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  54158395 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 54158337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 3112994 - 3113043
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  3112994 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 3113043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 511
Target Start/End: Original strand, 9349679 - 9349733
Alignment:
Q  457 ttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  9349679 ttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 9349733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 36228993 - 36229051
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| |||||| || |||||||||||||||||||||| | ||||||    
T  36228993 ggtcttagatgaagtggtaatccattgaaaataaactcacacacaactgtgaggtcccg 36229051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 54151680 - 54151738
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||||||| | ||||||    
T  54151680 ggtcttagatgaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccg 54151738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 454 - 500
Target Start/End: Original strand, 55320400 - 55320446
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaact 500  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  55320400 gtcttagatgaagtggtaatccactgaaaataaactcacacacaact 55320446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 29210941 - 29210844
Alignment:
Q  329 tatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagagttgttttatctaatcct-agccccatgttttttatgatgt 425  Q
    ||||| |||||||||||| |||| ||||||||||  || ||||||| |||||||||||    ||||||||||||| | |||||| |||||||||||||    
T  29210941 tatgtggtgtcgtttgttcggaggcaagcaaataaagtaactcatagcattgctagagcctctttatctaatcctaacccccatattttttatgatgt 29210844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 52500967 - 52500918
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  52500967 ggtcttagatgaagtggtaatctactgaaaataaactcacacacaactgt 52500918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 4601553 - 4601505
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  4601553 gtcttagatgaactggtaatccactgaaaataaactcacacacaactgt 4601505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 511
Target Start/End: Original strand, 55018040 - 55018091
Alignment:
Q  460 gatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  55018040 gatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 55018091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 4601474 - 4601424
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||||||||||| ||||||||| || ||||||||||||    
T  4601474 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagact 4601424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 28844634 - 28844584
Alignment:
Q  453 ggtcttagatgaagtggaaatccactg-taaataaactcacacacaactgt 502  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  28844634 ggtcttagatgaagtggtaatccactgaaaaataaactcacacacaactgt 28844584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 32001508 - 32001554
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagacta 557  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||    
T  32001508 gccttacaatttcggcatttaccagttgaggtaggacttctagacta 32001554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 7824533 - 7824582
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  7824533 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 7824582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 29689561 - 29689610
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  29689561 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 29689610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 51666004 - 51666053
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  51666004 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 51666053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 54151760 - 54151809
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  54151760 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54151809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 54158315 - 54158266
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  54158315 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54158266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 555
Target Start/End: Complemental strand, 1778903 - 1778851
Alignment:
Q  503 aatgtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||| ||||||||||||||||||||  |||||||| || |||||||||||    
T  1778903 aatgtccggccttgcaatttcggcatttgtcagttgagctaggacttctagac 1778851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 42392890 - 42392934
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||    
T  42392890 ccttgcaatttcggcatttgccagttgagctaggacttctagact 42392934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 41377708 - 41377666
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacaca 495  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||    
T  41377708 ggtcttagatgaagtggtaatccgctgaaaataaactcacaca 41377666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 42392804 - 42392862
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| || |||||| || ||||||||||||||| ||| | ||||||    
T  42392804 ggtcttagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtcccg 42392862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 556
Target Start/End: Original strand, 43247729 - 43247779
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||| ||||||| ||||||||| || ||||||||||||    
T  43247729 gtccggccttgcaattttggcatttgccagttgagctaggacttctagact 43247779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 29750670 - 29750621
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| ||  ||||||||||    
T  29750670 gtccagccttgcaatttcggcatttgccagttgagttagtacttctagac 29750621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 475281 - 475328
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||| ||||| || |||||||||||||||||||    
T  475281 gtcttagatgaagtggtaattcactg-aattaaactcacacacaactgt 475328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 32001424 - 32001472
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||| ||||||||| ||  ||||| ||||||||||||||||||||||    
T  32001424 gtcttatatgaagtggtaaatcactgaaaataaactcacacacaactgt 32001472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 35461564 - 35461608
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||    
T  35461564 ccttgcaatttcggcatttgccagttgagctagaacttctagact 35461608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 43775351 - 43775303
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| || |||||||| | ||||||||    
T  43775351 gtcttagatgaagtggtaatccactgaaattaaactcaaatacaactgt 43775303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 275 - 440
Target Start/End: Complemental strand, 16468499 - 16468333
Alignment:
Q  275 gaaattggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcata 374  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||  ||||||    
T  16468499 gaaattggtgatttaatttcggaatgtaaaattctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggtaagcaaacagtgtagctcata 16468400  T
Q  375 acattgctagagttgttttatctaatcctagccc-catgttttttatgatgttcctactagcttgta 440  Q
    |||||||||||| || | |||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  16468399 acattgctagagctgctctatctaatcctagccctcatgtcttttatgatgttcctactagtttgta 16468333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 275 - 445
Target Start/End: Complemental strand, 25392122 - 25391955
Alignment:
Q  275 gaaattggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcata 374  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||| || ||  ||||||||||| ||        
T  25392122 gaaattggtgatttagtttcggaatgtaagactctcttgttaagtaatcccgactatgtagtgtcgtttattagaagccagacaaatagtgtggct---- 25392027  T
Q  375 acattgctagagttgttttatctaatcctag--ccccatgttttttatgatgttcctactagcttgtactctc 445  Q
      |||||||||| || | |||| ||||||||  |||||| | ||||||||||||||||||| |||||| ||||    
T  25392026 -gattgctagagctgatctatccaatcctagccccccatatcttttatgatgttcctactaccttgtattctc 25391955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 10639605 - 10639663
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  10639605 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 10639663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 37197609 - 37197667
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  37197609 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 37197667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 33083554 - 33083611
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  33083554 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 33083611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 34460498 - 34460449
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  34460498 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 34460449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 45125164 - 45125213
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  45125164 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 45125213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 23839987 - 23839939
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  23839987 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 23839939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 29659218 - 29659266
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  29659218 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 29659266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 42578296 - 42578248
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  42578296 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 42578248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 26605753 - 26605695
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||||||| | ||||||    
T  26605753 ggtcttagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggtcccg 26605695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 19537436 - 19537387
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  19537436 ggtcttagatgaagtggtaatccactgaaaataaacacacacacaactgt 19537387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 43778468 - 43778516
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| |||||| || ||||||||||||||||||||||    
T  43778468 gtcttagatgaagtggtaatccaatgaaaataaactcacacacaactgt 43778516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 10748042 - 10748105
Alignment:
Q  323 cccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagag 386  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| ||  ||||||| ||||||||||    
T  10748042 cccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagag 10748105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 11459844 - 11459786
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| |||||| || |||||||| ||||||||||||| | ||||||    
T  11459844 ggtcttagatgaagtggtaatccattgaaaataaacacacacacaactgtgaggtcccg 11459786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 27137917 - 27137975
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| || |||||||||| | |||||||| ||||||    
T  27137917 ggtcttagatgaagtggtaatccactgaaattaaactcacataaaactgtaaggtcccg 27137975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 556
Target Start/End: Original strand, 40786288 - 40786338
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| ||||||||||||||||||||  |||||||| |||||||||||||||    
T  40786288 gtccggccttgcaatttcggcatttgtcagttgagttatgacttctagact 40786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 10639685 - 10639734
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  10639685 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 10639734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 11708803 - 11708758
Alignment:
Q  457 ttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||    
T  11708803 ttagatgaagtggtaatccactgaaaataaacccacacacaactgt 11708758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 26605673 - 26605624
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  26605673 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 26605624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 33083633 - 33083682
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  33083633 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33083682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 44181887 - 44181935
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||| |||||  ||||||||| ||||||||||||||||||||||    
T  44181887 gtcttagattaagtgataatccactgaaaataaactcacacacaactgt 44181935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Complemental strand, 11459758 - 11459715
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||||||||||||||| ||||||||| || |||||||||||    
T  11459758 ccttgcaatttcggcatttgccagttgagctaggacttctagac 11459715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Complemental strand, 34234573 - 34234530
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||||||||||||||| ||||||||| || |||||||||||    
T  34234573 ccttgcaatttcggcatttgccagttgagctaggacttctagac 34234530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Complemental strand, 42578223 - 42578180
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||||||||||||||| ||||||||| || |||||||||||    
T  42578223 ccttgcaatttcggcatttgccagttgagctaggacttctagac 42578180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 4851449 - 4851391
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||| |||||||||| ||||||||  || ||||||||||||||||||| | ||||||    
T  4851449 ggtcttggatgaagtggtaatccactaaaattaaactcacacacaactgtgaggtcccg 4851391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 16654412 - 16654366
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttcta 552  Q
    |||| ||||||||||||||||||||| |||||||| || ||||||||    
T  16654412 gtccggccttgcaatttcggcatttatcagttgagttaggacttcta 16654366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 19048803 - 19048753
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| ||||| |||||||||||||| ||||||||| || ||||||||||||    
T  19048803 gtccggccttacaatttcggcatttgccagttgagctaggacttctagact 19048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 23839908 - 23839858
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||| ||||||| ||||||||| || ||||||||||||    
T  23839908 gtccggccttgcaattttggcatttgccagttgagttaggacttctagact 23839858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 43684119 - 43684073
Alignment:
Q  505 tgtcccgccttgcaatttcggcatttaccagttgagatatgacttct 551  Q
    ||||| ||||||||||||||||||||  ||||||||||| |||||||    
T  43684119 tgtccggccttgcaatttcggcatttgtcagttgagataggacttct 43684073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 11708727 - 11708678
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| ||||| |||||||||||||| ||||||||| || |||||||||||    
T  11708727 gtccggccttacaatttcggcatttgccagttgagctaggacttctagac 11708678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 19048882 - 19048825
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| || |||||| || ||||||||||||||| ||| | ||||||    
T  19048882 gtcttagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccg 19048825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 19537356 - 19537307
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||  || |||||||||||    
T  19537356 gtccggccttgcaatttcggcatttgccagttgaactaggacttctagac 19537307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 19816269 - 19816220
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| ||||||||||||||| |||| ||||||||| || |||||||||||    
T  19816269 gtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 19816220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 34460418 - 34460369
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| ||||||||||||||||||||  |||||||| || |||||||||||    
T  34460418 gtccggccttgcaatttcggcatttgtcagttgagctaggacttctagac 34460369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 39831444 - 39831501
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| || |||||| || ||||||||||||||| ||| | ||||||    
T  39831444 gtcttagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtcccg 39831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 45125244 - 45125293
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| ||||| |||||||||||||| ||||||||| || |||||||||||    
T  45125244 gtccggccttacaatttcggcatttgccagttgagctaggacttctagac 45125293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 501
Target Start/End: Complemental strand, 19816349 - 19816301
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactg 501  Q
    ||||||||||||||| | |||| |||| ||||||||||| |||||||||    
T  19816349 ggtcttagatgaagttgtaatctactgaaaataaactcatacacaactg 19816301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 7274477 - 7274648
Alignment:
Q  275 gaaattggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcata 374  Q
    ||||||||||||||||||||  |||| |||||| | ||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||| ||||||    
T  7274477 gaaattggtgatttagtttcataatgcaaaactttcttgttaagtaatcccgactatgtagtgtcgtttattaggaggcaagaaaatagtgtggctcata 7274576  T
Q  375 acattgctagagttgttttatctaatcctag-ccccatgttttttatgatgttcctactagcttgtactctc 445  Q
    | ||||| |||| || | ||||  ||||||| |||||||| ||||||||||||||||||| |||||| ||||    
T  7274577 atattgcgagagatgctctatcgtatcctagcccccatgtcttttatgatgttcctactaccttgtattctc 7274648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 21018352 - 21018294
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  21018352 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 21018294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 454 - 504
Target Start/End: Complemental strand, 23262672 - 23262622
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaa 504  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23262672 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaa 23262622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 29266004 - 29265946
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  29266004 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 29265946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 31909384 - 31909442
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  31909384 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 31909442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 32143413 - 32143471
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  32143413 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 32143471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 35317696 - 35317754
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  35317696 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 35317754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 4824938 - 4824996
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| |||||| || |||||||||||||||||||||| | ||||||    
T  4824938 ggtcttagatgaagtggtaatccattgaaaataaactcacacacaactgtgaggtcccg 4824996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 13204086 - 13204028
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| |||||| | ||||||    
T  13204086 ggtcttagatgaagtggtaatccactgaaaataaactcacacataactgtgaggtcccg 13204028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 12257485 - 12257440
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaa 498  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  12257485 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaa 12257440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 2971112 - 2971064
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  2971112 gtcttagatgaagtggtaatccaccgaaaataaactcacacacaactgt 2971064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 30127945 - 30127894
Alignment:
Q  504 atgtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||| |||||||||||||||||||||| ||||||| || |||||||||||    
T  30127945 atgtccggccttgcaatttcggcatttacaagttgagctaggacttctagac 30127894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 32143486 - 32143532
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagacta 557  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  32143486 gccttgcaattttggcatttgccagttgagctatgacttctagacta 32143532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 499
Target Start/End: Complemental strand, 40177749 - 40177707
Alignment:
Q  457 ttagatgaagtggaaatccactgtaaataaactcacacacaac 499  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  40177749 ttagatgaagtggtaatccactgaaaataaactcacacacaac 40177707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 13204006 - 13203957
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  13204006 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 13203957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 506 - 554
Target Start/End: Original strand, 4825018 - 4825066
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctaga 554  Q
    |||| |||||||||||||||||||| ||||||||| || ||||||||||    
T  4825018 gtccggccttgcaatttcggcatttgccagttgagctaggacttctaga 4825066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 501
Target Start/End: Complemental strand, 6021117 - 6021073
Alignment:
Q  457 ttagatgaagtggaaatccactgtaaataaactcacacacaactg 501  Q
    |||||| |||||| ||||||||| |||||||||||||||||||||    
T  6021117 ttagataaagtggtaatccactgaaaataaactcacacacaactg 6021073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 38955276 - 38955228
Alignment:
Q  507 tcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||||||||||||||||||||||| ||||||| ||  ||||||||||    
T  38955276 tcccgccttgcaatttcggcatttactagttgagctagaacttctagac 38955228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 500
Target Start/End: Complemental strand, 21112178 - 21112131
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaact 500  Q
    |||||||||||| |||| ||||||||| ||||||||||| ||||||||    
T  21112178 ggtcttagatgatgtggtaatccactgaaaataaactcaaacacaact 21112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 35317782 - 35317825
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||||||||||||||| ||||||||| || |||||||||||    
T  35317782 ccttgcaatttcggcatttgccagttgagctaggacttctagac 35317825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 1191619 - 1191668
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||| ||||| ||||||||| || |||||||||||    
T  1191619 gtccggccttgcaatttcgtcatttgccagttgagctaggacttctagac 1191668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 12257400 - 12257355
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    ||||| |||||||||||||| ||||||||| || ||||||||||||    
T  12257400 gccttacaatttcggcatttgccagttgagctaggacttctagact 12257355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 27721472 - 27721431
Alignment:
Q  514 ttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  27721472 ttgcaatttcggcattttccagttgagctaggacttctagac 27721431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 2786398 - 2786351
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| || |||||||| ||||||||||    
T  2786398 gtcttagatgaagtggtaatccactg-aattaaactcatacacaactgt 2786351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 555
Target Start/End: Original strand, 9577045 - 9577089
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||||||||| |||||| ||||||||| || |||||||||||    
T  9577045 gccttgcaatttcagcatttgccagttgagctaggacttctagac 9577089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 44139675 - 44139786
Alignment:
Q  275 gaaattggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcata 374  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  44139675 gaaattggtgatttagtttcagaatgtaaaactctcttgttaaataatcccgactatatagtgtcgtttgttaggaggcaagcaaatagtgtggctcata 44139774  T
Q  375 acattgctagag 386  Q
    ||||||| ||||    
T  44139775 acattgcaagag 44139786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 276 - 386
Target Start/End: Original strand, 23809423 - 23809533
Alignment:
Q  276 aaattggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataa 375  Q
    |||||| |||||||||||| |||||||||||||| |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  23809423 aaattgatgatttagtttcagaatgtaaaactctcttgttaagtaattccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataa 23809522  T
Q  376 cattgctagag 386  Q
    |||||| ||||    
T  23809523 cattgcaagag 23809533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 393
Target Start/End: Complemental strand, 26095014 - 26094896
Alignment:
Q  275 gaaattggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcata 374  Q
    |||||||||||||||||||  |||||| ||||| | ||| | |||||  | |||||||||||||||||||||| ||| ||||| ||||  ||  |||  |    
T  26095014 gaaattggtgatttagtttttgaatgtcaaactttgttgcttagtaattctgactatgtagtgtcgtttgttaagaggcaagctaataaagtagctctca 26094915  T
Q  375 acattgctagagttgtttt 393  Q
    |||||||||||||||||||    
T  26094914 acattgctagagttgtttt 26094896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 28456003 - 28455945
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  28456003 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 28455945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 32007203 - 32007145
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  32007203 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 32007145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 41039302 - 41039360
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  41039302 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 41039360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 45813010 - 45813068
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  45813010 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 45813068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 5055788 - 5055845
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  5055788 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 5055845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 41808331 - 41808282
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  41808331 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 41808282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 48660150 - 48660102
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  48660150 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 48660102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 20876 - 20819
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||| | ||||||    
T  20876 gtcttagatgaagtggtaatccactaaaaataaactcacacacaactgtgaggtcccg 20819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 192544 - 192495
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  192544 ggtcttagatgaagtggtaatccgctgaaaataaactcacacacaactgt 192495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 41761410 - 41761459
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  41761410 ggtcttggatgaagtggtaatccactgaaaataaactcacacacaactgt 41761459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 13109898 - 13109850
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||||    
T  13109898 gtcttagatgaagtggtaatccactgaaattaaactcacacacaactgt 13109850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 500
Target Start/End: Complemental strand, 11688392 - 11688345
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaact 500  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  11688392 ggtcttggatgaagtggtaatccactgaaaataaactcacacacaact 11688345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 28455923 - 28455872
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagacta 557  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||||    
T  28455923 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagacta 28455872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 502
Target Start/End: Complemental strand, 35945924 - 35945877
Alignment:
Q  455 tcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  35945924 tcttagatgaagtggtaatccactgaaaataaattcacacacaactgt 35945877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 20797 - 20747
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||||||||||| ||||||||| || ||||||||||||    
T  20797 gtcctgccttgcaatttcggcatttgccagttgagttaggacttctagact 20747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 32007123 - 32007073
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||||||||||| ||||||||| || ||||||||||||    
T  32007123 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagact 32007073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 39276479 - 39276421
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||| |||||| | ||||||    
T  39276479 ggtcttaaatgaagtggtaatccactgaaaataaactcacacataactgtgaggtcccg 39276421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 7386662 - 7386759
Alignment:
Q  329 tatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagagttgttttatctaatcctagcccc-atgttttttatgatgt 425  Q
    ||||| || |||||||||  ||| ||||||||||  ||  |||||| |||||||||||    ||||||||||||||||||| ||||||||||||||||    
T  7386662 tatgtggtatcgtttgttccgaggcaagcaaataaagtagctcatagcattgctagagcctctttatctaatcctagcccccatgttttttatgatgt 7386759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 29994467 - 29994512
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||    
T  29994467 gccttgcaatttcggcatttgccagttgagctaggacttctagact 29994512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 41808251 - 41808202
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  41808251 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 41808202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 48660071 - 48660022
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  48660071 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 48660022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 506 - 554
Target Start/End: Complemental strand, 35945846 - 35945798
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctaga 554  Q
    |||| ||||| |||||||||||||||||||||||| || ||||||||||    
T  35945846 gtccagccttacaatttcggcatttaccagttgagctaggacttctaga 35945798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 509
Target Start/End: Original strand, 35110099 - 35110154
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcc 509  Q
    |||||||||||||||| ||||| ||  || ||||||||||||||||||||| ||||    
T  35110099 gtcttagatgaagtggtaatcctctcaaattaaactcacacacaactgtaaggtcc 35110154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 556
Target Start/End: Original strand, 5055867 - 5055917
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||||||||||| |||| |||| || ||||||||||||    
T  5055867 gtccggccttgcaatttcggcatttgccagctgagctaggacttctagact 5055917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 553
Target Start/End: Complemental strand, 21938986 - 21938944
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctag 553  Q
    ||||| |||||||||||||||||||||||| || |||||||||    
T  21938986 gccttacaatttcggcatttaccagttgagctaggacttctag 21938944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 29587301 - 29587255
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttcta 552  Q
    |||| |||||||||||||||||||| ||||||||| || ||||||||    
T  29587301 gtccggccttgcaatttcggcatttgccagttgagctaggacttcta 29587255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 26032930 - 26032881
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||| || ||||||||| || |||||||||||| ||||||    
T  26032930 ggtcttagatgaagcggtaatccactgaaattaaactcacacaaaactgt 26032881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 29994382 - 29994427
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaa 498  Q
    ||||||||||||||||| || |||||| || |||||||||||||||    
T  29994382 ggtcttagatgaagtggtaaaccactgaaattaaactcacacacaa 29994427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 41761490 - 41761539
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||  || |||||||||||    
T  41761490 gtccggccttgcaatttcggcatttgccagttgaactaggacttctagac 41761539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 511
Target Start/End: Original strand, 50106200 - 50106253
Alignment:
Q  458 tagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||| ||| ||||||||| ||||||||||||||| |||||| | ||||||    
T  50106200 tagatgaaatggcaatccactgaaaataaactcacacataactgtgaggtcccg 50106253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 778702 - 778654
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||| ||| ||| ||||| || |||||||||||||||||||    
T  778702 gtcttagatgaattggtaattcactgaaattaaactcacacacaactgt 778654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 3716490 - 3716442
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||| ||||||||||  ||||||||  ||||||||||||||||||||||    
T  3716490 gtctaagatgaagtgacaatccactaaaaataaactcacacacaactgt 3716442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 7059595 - 7059547
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||| |||||| ||||||||  || |||||||||||||||||||    
T  7059595 gtcttagataaagtggtaatccacttaaattaaactcacacacaactgt 7059547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 39501117 - 39501157
Alignment:
Q  323 cccgactatgtagtgtcgtttgttaggagacaagcaaatag 363  Q
    ||||||| ||||||||||| ||||||||| |||||||||||    
T  39501117 cccgactttgtagtgtcgtatgttaggaggcaagcaaatag 39501157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 23417482 - 23417540
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  23417482 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaagtcccg 23417540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 28798388 - 28798445
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  28798388 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggtcccg 28798445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 26424857 - 26424915
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  26424857 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 26424915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 34739409 - 34739351
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  34739409 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 34739351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 45874184 - 45874126
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  45874184 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 45874126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 1174079 - 1174022
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  1174079 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 1174022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 12735560 - 12735511
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  12735560 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 12735511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 43139906 - 43139963
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  43139906 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 43139963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 53457952 - 53457895
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  53457952 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 53457895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 238457 - 238515
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  238457 ggtcttcgatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 238515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 409
Target Start/End: Original strand, 43733858 - 43733988
Alignment:
Q  279 ttggtgatttagtttcggaatgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacat 378  Q
    ||||||| ||||| || |||||||| | ||||||||  ||||| |||||||||||| |||||||| | | ||| ||||||||||  ||  ||||||  ||    
T  43733858 ttggtgacttagtatctgaatgtaagagtcttttgtctagtaatcccgactatgtaatgtcgtttatcaagaggcaagcaaatatggtagctcatagtat 43733957  T
Q  379 tgctagagttgttttatctaatcctagcccc 409  Q
    |||||||| ||  |||||| |||||||||||    
T  43733958 tgctagagctgccttatctcatcctagcccc 43733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 12867970 - 12867921
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  12867970 ggtcttagatgaagtggtaatccactgaaaataaactcactcacaactgt 12867921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 18257457 - 18257400
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||||||| | ||||||    
T  18257457 gtcttagatgaagtggtaatccactgaaaataaactcacgcacaactgtgaggtcccg 18257400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 23710412 - 23710461
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  23710412 gtccggccttgcaatttcgacatttaccagttgagctatgacttctagac 23710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 50347329 - 50347386
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||| |||| ||||||||| || |||||||||||||| |||||||||||||    
T  50347329 gtcttagatgaggtggtaatccactgaaattaaactcacacacatctgtaatgtcccg 50347386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 540
Target Start/End: Complemental strand, 23532172 - 23532088
Alignment:
Q  457 ttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtccc-gccttgcaatttcggcatttaccagttgag 540  Q
    ||||| ||||||| ||| ||||| || ||||||||||||||||||| | ||||| |||||||||||||| |||||  ||||||||    
T  23532172 ttagaagaagtggtaattcactgaaattaaactcacacacaactgtgaagtcccggccttgcaatttcgacatttgtcagttgag 23532088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 11278033 - 11277982
Alignment:
Q  504 atgtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  11278033 atgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 11277982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 509 - 556
Target Start/End: Original strand, 26424939 - 26424986
Alignment:
Q  509 ccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||||||||||||||||||||| ||||||||| || ||||||||||||    
T  26424939 ccgccttgcaatttcggcatttgccagttgagctaggacttctagact 26424986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 42327991 - 42327928
Alignment:
Q  323 cccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagag 386  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| ||  ||||||| ||||||||||    
T  42327991 cccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagag 42327928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 55400277 - 55400226
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagacta 557  Q
    |||| |||||||||||||||||||||||||||||| || || ||||||||||    
T  55400277 gtccggccttgcaatttcggcatttaccagttgagttaggatttctagacta 55400226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 19849502 - 19849560
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| || ||| || |||||||||||||||||||||| | ||||||    
T  19849502 ggtcttagatgaagtggtaaaccattgaaaataaactcacacacaactgtgaggtcccg 19849560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 556
Target Start/End: Original strand, 19849582 - 19849632
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||||||||||| ||||||||| || ||||||||||||    
T  19849582 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagact 19849632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 34739329 - 34739279
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||||||||||| ||||||||| || ||||||||||||    
T  34739329 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagact 34739279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 500
Target Start/End: Complemental strand, 55400356 - 55400310
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaact 500  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  55400356 gtcttagatgaagtggtaatccactgaaaataaactcacatacaact 55400310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 1174000 - 1173951
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  1174000 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 1173951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 1966678 - 1966621
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||| | ||||||||| || ||||||||||||||||||| | ||||||    
T  1966678 gtcttagatgaagttgtaatccactgaaattaaactcacacacaactgtgaggtcccg 1966621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 2864827 - 2864876
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||||||||||||| ||||||| ||||||||| || |||||||||||    
T  2864827 gtcccgccttgcaatttaggcatttgccagttgagttaggacttctagac 2864876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 18257378 - 18257329
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  18257378 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 18257329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 54768431 - 54768480
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||| |||||| |||||||||||    
T  54768431 ggtcttagatgaagtggtaatccactgaaaaaaaactcgcacacaactgt 54768480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 54768511 - 54768560
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  54768511 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54768560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 511
Target Start/End: Complemental strand, 55214779 - 55214723
Alignment:
Q  455 tcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||| |||||| ||||||||| ||||||||||| |||||||||| | ||||||    
T  55214779 tcttagataaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccg 55214723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Complemental strand, 53457867 - 53457824
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||||||||||||||| ||||||||| || |||||||||||    
T  53457867 ccttgcaatttcggcatttgccagttgagctaggacttctagac 53457824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 555
Target Start/End: Complemental strand, 12767125 - 12767087
Alignment:
Q  517 caatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||||||||||||||||||||| || |||||||||||    
T  12767125 caatttcggcatttaccagttgagctaggacttctagac 12767087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 238537 - 238586
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| ||||||||||||||||||||  |||||||| || |||||||||||    
T  238537 gtccagccttgcaatttcggcatttgacagttgagctaggacttctagac 238586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 28798467 - 28798516
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||  || |||||||||||    
T  28798467 gtccggccttgcaatttcggcatttgccagttgaactaggacttctagac 28798516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 32441168 - 32441213
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||||||||||||| ||||| ||||||||| || ||||||||||||    
T  32441168 gccttgcaatttcgacatttgccagttgagctaggacttctagact 32441213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 43139985 - 43140034
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| ||  ||||||||||    
T  43139985 gtccggccttgcaatttcggcatttgccagttgagctagaacttctagac 43140034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 555
Target Start/End: Original strand, 19674013 - 19674057
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||||||||||  ||||||||||||||| || |||||||||||    
T  19674013 gccttgcaatttctacatttaccagttgagctaagacttctagac 19674057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 29581044 - 29581091
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||  || |||||||||||||||||||    
T  29581044 gtcttagatgaagtggtaatccact-aaattaaactcacacacaactgt 29581091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 31015110 - 31015062
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||  ||||| || |||||||||||||||||||    
T  31015110 gtcttagatgaagtggtaaagcactgaaattaaactcacacacaactgt 31015062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 39807963 - 39807915
Alignment:
Q  463 gaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||| ||||||||| || ||||||||||||||||||| | ||||||    
T  39807963 gaagtggtaatccactgaaattaaactcacacacaactgtgaggtcccg 39807915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 861 - 919
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  861 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 941 - 990
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  941 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 13950 - 14008
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  13950 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 14008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 19630 - 19688
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  19630 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 19688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 14030 - 14079
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| ||||||||||||||| |||| ||||||||| || |||||||||||    
T  14030 gtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 14079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 19710 - 19759
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| ||||||||||||||| |||| ||||||||| || |||||||||||    
T  19710 gtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 19759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 56610 - 56552
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  56610 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 56552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 556
Target Start/End: Complemental strand, 56524 - 56480
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||    
T  56524 ccttgcaatttcggcatttgccagttgagctaggacttctagact 56480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 1339 - 1397
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  1339 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 1397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 1078647 - 1078705
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  1078647 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 1078705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 6602517 - 6602575
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  6602517 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 6602575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 6677970 - 6678028
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  6677970 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 6678028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 32333243 - 32333185
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  32333243 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 32333185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 35779496 - 35779554
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  35779496 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 35779554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 70523 - 70580
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  70523 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 70580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 28817385 - 28817336
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  28817385 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 28817336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 42192638 - 42192687
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  42192638 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 42192687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 42885303 - 42885254
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  42885303 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgt 42885254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 455 - 511
Target Start/End: Complemental strand, 9292145 - 9292089
Alignment:
Q  455 tcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  9292145 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaagtcccg 9292089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 511
Target Start/End: Complemental strand, 7813447 - 7813393
Alignment:
Q  457 ttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  7813447 ttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 7813393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 1078727 - 1078776
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||||||||||||| || |||||||||||    
T  1078727 gtccggccttgcaatttcggcatttaccagttgagctacgacttctagac 1078776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 7792790 - 7792741
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  7792790 ggtcttagatgaagtagtaatccactgaaaataaactcacacacaactgt 7792741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 559
Target Start/End: Original strand, 12534797 - 12534850
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagactact 559  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||||||    
T  12534797 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagactact 12534850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 409
Target Start/End: Complemental strand, 5896407 - 5896315
Alignment:
Q  317 agtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagagttgttttatctaatcctagcccc 409  Q
    ||||| ||| ||||||||||||||||||||||||| |||| |||||  ||  ||||||  |||||||||| ||  |||||| |||||||||||    
T  5896407 agtaatcccaactatgtagtgtcgtttgttaggaggcaagaaaatatagtagctcatagtattgctagagctgccttatctcatcctagcccc 5896315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 13891218 - 13891170
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||||    
T  13891218 gtcttagatgaagtggtaaaccactgaaaataaactcacacacaactgt 13891170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 9180819 - 9180756
Alignment:
Q  323 cccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagag 386  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| ||  ||||||| ||||||||||    
T  9180819 cccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagag 9180756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 495
Target Start/End: Original strand, 10963241 - 10963283
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacaca 495  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  10963241 ggtcttagatgaagtggtaatccactgaaaataaactcacaca 10963283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 6602597 - 6602646
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  6602597 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 6602646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 6678050 - 6678099
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  6678050 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 6678099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 7792710 - 7792661
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  7792710 gtccagccttgcaatttcggcatttgccagttgagctaggacttctagac 7792661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 28817305 - 28817256
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  28817305 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 28817256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 31532128 - 31532173
Alignment:
Q  457 ttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||| ||||||||| || |||||||||||||||||||    
T  31532128 ttagatgaagtggtaatccactgaaattaaactcacacacaactgt 31532173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 32333163 - 32333114
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  32333163 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 32333114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 42192718 - 42192767
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  42192718 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 42192767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 29425479 - 29425435
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaa 498  Q
    |||||||||||||||| ||||||||| || |||||||||||||||    
T  29425479 gtcttagatgaagtggtaatccactgaaattaaactcacacacaa 29425435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 70608 - 70651
Alignment:
Q  512 ccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    ||||||||||||||||||| ||||||||| || |||||||||||    
T  70608 ccttgcaatttcggcatttgccagttgagctaggacttctagac 70651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 11629492 - 11629555
Alignment:
Q  323 cccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagag 386  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| ||  ||||||  ||||||||||    
T  11629492 cccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagag 11629555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 502
Target Start/End: Complemental strand, 20269657 - 20269610
Alignment:
Q  455 tcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||| ||| |||||| || ||||||||||||||||||||||    
T  20269657 tcttagatgaaatggtaatccattgaaaataaactcacacacaactgt 20269610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 502
Target Start/End: Complemental strand, 21056286 - 21056239
Alignment:
Q  455 tcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||| ||| |||||| || ||||||||||||||||||||||    
T  21056286 tcttagatgaaatggtaatccattgaaaataaactcacacacaactgt 21056239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 557
Target Start/End: Original strand, 35779576 - 35779627
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagacta 557  Q
    |||| |||||||||||| ||||||| ||||||||| || |||||||||||||    
T  35779576 gtccggccttgcaattttggcatttgccagttgagctaggacttctagacta 35779627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 40911270 - 40911219
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagacta 557  Q
    |||| |||||||||||||||||||| ||||||||| ||  ||||||||||||    
T  40911270 gtccggccttgcaatttcggcatttgccagttgagctagcacttctagacta 40911219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 4530981 - 4531039
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| || |||||| || |||||||||||||| |||| | ||||||    
T  4530981 ggtcttagatgaagtggtaaaccactgaaattaaactcacacacagctgtgaggtcccg 4531039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 8703352 - 8703470
Alignment:
Q  299 tgtaaaactcttttgttaagtaaccccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagagttgttttatcta 398  Q
    ||||||||||| ||| | |||||   ||||||| || |||||||||||||||| ||||| ||||  ||  |||| ||||||||||||| |  |||||||     
T  8703352 tgtaaaactctgttgcttagtaatttcgactatataatgtcgtttgttaggaggcaagctaataaagtagctcacaacattgctagagctactttatctc 8703451  T
Q  399 atcctagcc-ccatgtttt 416  Q
    |||||| || |||||||||    
T  8703452 atcctatcctccatgtttt 8703470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 4531061 - 4531110
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||| ||||| || |||||||||||    
T  4531061 gtccagccttgcaatttcggcatttgccaattgagctaggacttctagac 4531110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 39303358 - 39303313
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttct 551  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||    
T  39303358 gtccggccttgcaatttcggcatttgccagttgagctaggacttct 39303313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 39303438 - 39303389
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaat-aaactcacacacaactgt 502  Q
    |||||||||||||||| ||||||||| || | ||||||||||||||||||    
T  39303438 gtcttagatgaagtggtaatccactgaaattaaaactcacacacaactgt 39303389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 42364788 - 42364829
Alignment:
Q  514 ttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||||||||||||||  ||||||||||| |||||||||||    
T  42364788 ttgcaatttcggcatttggcagttgagataggacttctagac 42364829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 45264640 - 45264697
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||| ||||||| ||||||||| || |||||||||||| |||||| | ||||||    
T  45264640 gtcttagaggaagtggtaatccactgaaattaaactcacacaaaactgtgaggtcccg 45264697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 555
Target Start/End: Original strand, 10963324 - 10963368
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||| ||||||||||||| ||||||||| || |||||||||||    
T  10963324 gccttgtaatttcggcatttgccagttgagctaggacttctagac 10963368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 34752778 - 34752738
Alignment:
Q  323 cccgactatgtagtgtcgtttgttaggagacaagcaaatag 363  Q
    ||||||| ||||||||||| ||||||||| |||||||||||    
T  34752778 cccgactttgtagtgtcgtatgttaggaggcaagcaaatag 34752738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 45264727 - 45264767
Alignment:
Q  515 tgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||||||||||||| ||||||||| || |||||||||||    
T  45264727 tgcaatttcggcatttgccagttgagttaggacttctagac 45264767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 511
Target Start/End: Original strand, 35218639 - 35218697
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  35218639 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 35218697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 33704345 - 33704287
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  33704345 ggtcttaaatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 33704287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 21037419 - 21037370
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  21037419 ggtcttagatgaagtggtaattcactgaaaataaactcacacacaactgt 21037370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 10159043 - 10158980
Alignment:
Q  323 cccgactatgtagtgtcgtttgttaggagacaagcaaatagtgtgactcataacattgctagag 386  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| ||  ||||||| ||||||||||    
T  10159043 cccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagag 10158980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 33621623 - 33621565
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    ||||||||||||||||| || |||||| || ||||||||||||||||||| | ||||||    
T  33621623 ggtcttagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccg 33621565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 4464256 - 4464207
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||||||||||| || |||||| || |||||||||||||||||||    
T  4464256 ggtcttagatgaagtggtaaaccactgaaattaaactcacacacaactgt 4464207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 21000736 - 21000691
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||    
T  21000736 gccttgcaatttcggcatttgccagttgagctaggacttctagact 21000691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 33621543 - 33621494
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  33621543 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33621494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 33704265 - 33704216
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  33704265 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33704216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 29009650 - 29009698
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||| ||||  ||||||||||||||||||||||    
T  29009650 gtcttagatgaagtggtaattcactaaaaataaactcacacacaactgt 29009698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 555
Target Start/End: Complemental strand, 14939190 - 14939148
Alignment:
Q  513 cttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||||||||||||||| ||||||||| || |||||||||||    
T  14939190 cttgcaatttcggcatttgccagttgagttaggacttctagac 14939148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 28322981 - 28322931
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| ||||| |||||||||||||| ||||||||| || ||||||||||||    
T  28322981 gtccggccttacaatttcggcatttgccagttgagctaggacttctagact 28322931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 16518549 - 16518508
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacaca 495  Q
    |||||||||||| ||| ||||||||| |||||||||||||||    
T  16518549 gtcttagatgaaatggtaatccactgaaaataaactcacaca 16518508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 19145598 - 19145541
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| || |||| |||||||||| ||| | ||||||    
T  19145598 gtcttagatgaagtggtaatccactgaaattaaattcacacacaattgtgaggtcccg 19145541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 28323060 - 28323003
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| || |||||| || ||||||||||||||| ||| | ||||||    
T  28323060 gtcttagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccg 28323003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 35218712 - 35218757
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||||||||||| ||||||| ||||||||| || ||||||||||||    
T  35218712 gccttgcaattttggcatttgccagttgagctaggacttctagact 35218757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 555
Target Start/End: Complemental strand, 2959193 - 2959149
Alignment:
Q  511 gccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||||||||||||||||||| | ||||||| || |||||||||||    
T  2959193 gccttgcaatttcggcatttgctagttgagttaggacttctagac 2959149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 11456101 - 11456057
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaa 498  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  11456101 gtcttagatgaagtggtaatcgactagaaataaactcacacacaa 11456057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 24619079 - 24619123
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaa 498  Q
    |||||||||||||||| |||| |||| || |||||||||||||||    
T  24619079 gtcttagatgaagtggtaatcgactgaaattaaactcacacacaa 24619123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 28592128 - 28592176
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    ||||||||| || ||| |||||| || ||||||||||||||||||||||    
T  28592128 gtcttagataaattggtaatccattgaaaataaactcacacacaactgt 28592176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 500
Target Start/End: Original strand, 9972 - 10019
Alignment:
Q  453 ggtcttagatgaagtggaaatccactgtaaataaactcacacacaact 500  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  9972 ggtcttagatgaagtggtaatccactgaaaataaactcacacacaact 10019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 10052 - 10101
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagac 555  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  10052 gtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 10101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 556
Target Start/End: Original strand, 9022 - 9072
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||||||||| |||||||||||||||||||||||| ||  |||||||||||    
T  9022 gtcccgccttacaatttcggcatttaccagttgagctagaacttctagact 9072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 8943 - 8991
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgt 502  Q
    |||||||||||||||| ||  ||||| || |||||||||||||||||||    
T  8943 gtcttagatgaagtggtaaatcactgaaattaaactcacacacaactgt 8991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 22291 - 22234
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| ||||||||| || ||||||||||| ||||||| | ||||||    
T  22291 gtcttagatgaagtggtaatccactgaaattaaactcacacgcaactgtgaggtcccg 22234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 34867 - 34817
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| |||||||||||||||||||| ||||||||| || ||||||| ||||    
T  34867 gtccggccttgcaatttcggcatttgccagttgagctaggacttctggact 34817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 114301 - 114251
Alignment:
Q  506 gtcccgccttgcaatttcggcatttaccagttgagatatgacttctagact 556  Q
    |||| ||||| |||||||||||||| ||||||||| || ||||||||||||    
T  114301 gtccggccttacaatttcggcatttgccagttgagctaggacttctagact 114251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 114380 - 114323
Alignment:
Q  454 gtcttagatgaagtggaaatccactgtaaataaactcacacacaactgtaatgtcccg 511  Q
    |||||||||||||||| || |||||| || ||||||||||||||| ||| | ||||||    
T  114380 gtcttagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccg 114323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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