View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2242_high_12 (Length: 217)

Name: NF2242_high_12
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2242_high_12
NF2242_high_12
[»] chr2 (4 HSPs)
chr2 (36-202)||(32149144-32149310)
chr2 (36-202)||(1173862-1174027)
chr2 (37-67)||(9034006-9034036)
chr2 (37-77)||(41735843-41735883)
[»] chr4 (3 HSPs)
chr4 (55-202)||(41727108-41727255)
chr4 (34-63)||(12846024-12846053)
chr4 (34-63)||(44123579-44123608)
[»] chr8 (1 HSPs)
chr8 (34-67)||(28224201-28224234)
[»] chr7 (1 HSPs)
chr7 (34-63)||(3483958-3483987)
[»] chr1 (2 HSPs)
chr1 (34-63)||(5665997-5666026)
chr1 (36-64)||(25421549-25421577)
[»] chr5 (1 HSPs)
chr5 (37-77)||(22369642-22369682)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 32149144 - 32149310
Alignment:
Q  36 gctagggtgggagagcttgataggtctcccacaataagcaagcgagaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacacc 135  Q
    ||||| |||||||||||||||||||||||||   | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32149144 gctagtgtgggagagcttgataggtctcccatcgtgagcaagcgaaaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacacc 32149243  T
Q  136 aacaacaccggatactttttaattctcgctttgttctctcttctccatcttcaacctgctttctctg 202  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32149244 aacaacagcggatattttttaattctcgctttgttctctcttctccatcttcaacatgctttctctg 32149310  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 1173862 - 1174027
Alignment:
Q  36 gctagggtgggagagcttgataggtctcccacaataagcaagcgagaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacacc 135  Q
    ||||||||||||||||||||||||||||||||  | |||||| || ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  1173862 gctagggtgggagagcttgataggtctcccaccgtgagcaagtgaaaaatataacttttgacggtcatatattaaaattctatgactgttaacatacacc 1173961  T
Q  136 aacaacaccggatactttttaattctcgctttgttctctcttctccatcttcaacctgctttctctg 202  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  1173962 aacaaca-cggatactttttaattctcactttgttctctcttctccatcttcaaccttctttctctg 1174027  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 9034006 - 9034036
Alignment:
Q  37 ctagggtgggagagcttgataggtctcccac 67  Q
    |||||||||||||||||||||||||||||||    
T  9034006 ctagggtgggagagcttgataggtctcccac 9034036  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 41735883 - 41735843
Alignment:
Q  37 ctagggtgggagagcttgataggtctcccacaataagcaag 77  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  41735883 ctagggtgggagagcttgataggtctctcaccataggcaag 41735843  T

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Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 41727108 - 41727255
Alignment:
Q  55 ataggtctcccacaataagcaagcgagaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacaccaacaacaccggatactttt 154  Q
    |||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  41727108 ataggtctcccaccgtgagcaagcgaaaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacaccaacaacaccatatactttt 41727207  T
Q  155 taattctcgctttgttctctcttctccatcttcaacctgctttctctg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41727208 taattctcgctttgttctctcttctccatcttcaacctgctttctctg 41727255  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 12846024 - 12846053
Alignment:
Q  34 aggctagggtgggagagcttgataggtctc 63  Q
    ||||||||||||||||||||||||||||||    
T  12846024 aggctagggtgggagagcttgataggtctc 12846053  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 44123608 - 44123579
Alignment:
Q  34 aggctagggtgggagagcttgataggtctc 63  Q
    ||||||||||||||||||||||||||||||    
T  44123608 aggctagggtgggagagcttgataggtctc 44123579  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 28224201 - 28224234
Alignment:
Q  34 aggctagggtgggagagcttgataggtctcccac 67  Q
    ||||||||||||||||||||||||||||| ||||    
T  28224201 aggctagggtgggagagcttgataggtcttccac 28224234  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 3483958 - 3483987
Alignment:
Q  34 aggctagggtgggagagcttgataggtctc 63  Q
    ||||||||||||||||||||||||||||||    
T  3483958 aggctagggtgggagagcttgataggtctc 3483987  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 5665997 - 5666026
Alignment:
Q  34 aggctagggtgggagagcttgataggtctc 63  Q
    ||||||||||||||||||||||||||||||    
T  5665997 aggctagggtgggagagcttgataggtctc 5666026  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 25421549 - 25421577
Alignment:
Q  36 gctagggtgggagagcttgataggtctcc 64  Q
    |||||||||||||||||||||||||||||    
T  25421549 gctagggtgggagagcttgataggtctcc 25421577  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 22369642 - 22369682
Alignment:
Q  37 ctagggtgggagagcttgataggtctcccacaataagcaag 77  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  22369642 ctagggtgggagagcttgataggtctctcaccataggcaag 22369682  T

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