View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242_high_3 (Length: 420)
Name: NF2242_high_3
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 33 - 403
Target Start/End: Original strand, 12812274 - 12812651
Alignment:
| Q |
33 |
tggaaacaaaaattattcttaatttttatattattctctttttcctatttaattatagtataatgtgggctcctatataagttataagttactatcatat |
132 |
Q |
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| T |
12812274 |
tggaaacaaaaattattcttaatttttatattattctctttttcctatttaattatagtataatgtgggctcttatatgagttataagttactatcatat |
12812373 |
T |
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| Q |
133 |
tatttttctattgacgcatacttaaattgttgcagtttagggcaaggaaattatataaggtgt------gaatgagtcacgcgcatgtgtgtgttcacgc |
226 |
Q |
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| T |
12812374 |
tatttttctcttgatgcatactttaattgttgcagtttagggcaaggaaattatataaggtgtatgtatgaatgagtcacgcgcctgtgtgtgttcacgc |
12812473 |
T |
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| Q |
227 |
gcc-atgtgatgagtctttagacttcaacatcagatagcagtatttgtggaaatgtactaaccaccttctgatgagtctggttgcaatagtgatgatgaa |
325 |
Q |
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| T |
12812474 |
gcccatgtgatgagtctttagacttcaacatcagatagcagtatttgtggaaatgtactaaccaccttctgatgagtctggttgcaatagtgatgatgaa |
12812573 |
T |
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| Q |
326 |
attctgcaggttttgaccaatatttttgtagaaaaattggttccttaattttaatcaccaatatgcaagaatcatgat |
403 |
Q |
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| T |
12812574 |
attctgcaggttttgaccaatatttttgtagaaaaattggttccttaattttaatcaccaatatgcaagaatcatgat |
12812651 |
T |
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