View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242_high_4 (Length: 365)
Name: NF2242_high_4
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 32313614 - 32313270
Alignment:
| Q |
4 |
aaaatatatgtatgtagattcgatatttctacaaggcaactgtagtctaaccgttaaaattttaaaagagaatgtcttttaatgannnnnnngaattgta |
103 |
Q |
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| T |
32313614 |
aaaatatatgtatgtagattcgatatttctacaaggcaactgtagtctaaccgttaaaattttaaaagagaatgtcttttaatgatttttttgaattgta |
32313515 |
T |
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| Q |
104 |
gtatcttatgccttatgctccaatgactgaaccaaagaaactagtttatcaccgagttaactggattgatttgatgcatttatggattagagttgaataa |
203 |
Q |
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| T |
32313514 |
gtatcttatgccttatgctccaatgactgaaccaaagaaactagtttatcaccgagttaactggattgatttgatgcatttatggattagagttgaataa |
32313415 |
T |
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| Q |
204 |
tcgtagctcaaactagttgacttcaaaggtatcatcaactccaaatatacccttcaacgttaaattgggcaagaagaatagaacacagggaaaaaaggtt |
303 |
Q |
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| T |
32313414 |
tcgtagctcaaactagttgacttcaaaggtatcatcaactcctaatatacccttcaacgttaaattgggcaagaagaatagaacacagggaaaaaaggtt |
32313315 |
T |
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| Q |
304 |
tatagtagtcactaaaataaataaccaaaatggaatgaaaaggct |
348 |
Q |
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| T |
32313314 |
tatagtagtcactaaaataaataaccaaaatgaaattaaaaggct |
32313270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 197 - 344
Target Start/End: Original strand, 39364813 - 39364964
Alignment:
| Q |
197 |
tgaataatcgtagctcaaactagttgacttcaaaggtatcatcaactccaaatatacccttcaacgttaaattgggcaagaagaatagaacacagggaaa |
296 |
Q |
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| T |
39364813 |
tgaataatccttcctcaaactagttgacttcaaaggtatcatcaactcc-aatatacacttcaaggttaaattggggaagaagaatagaactca-agaaa |
39364910 |
T |
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| Q |
297 |
aaaggtt------tatagtagtcactaaaataaataaccaaaatggaatgaaaa |
344 |
Q |
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| T |
39364911 |
aaaggtttatatatatagtagtcactaaaataaataactaaaatggaatgaaaa |
39364964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 32566481 - 32566357
Alignment:
| Q |
36 |
aaggcaactgtagtctaaccgttaaaattttaaaagagaatgtcttttaatgannnnnnngaattgta---gtatcttatgccttatgctccaatgactg |
132 |
Q |
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|||||||| |||||||| |||| | ||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||| |||| | |
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| T |
32566481 |
aaggcaaccttagtctaatcgttgagattttaaaagagaatgtcttttaattatttttttgaattgtaagagtatcttatgccgtatgctccattgaccg |
32566382 |
T |
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| Q |
133 |
aaccaaagaaactagtttatcaccg |
157 |
Q |
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| T |
32566381 |
aaccaaagaaactagcttatcaccg |
32566357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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