View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2242_high_5 (Length: 352)
Name: NF2242_high_5
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 38469068 - 38468753
Alignment:
| Q |
17 |
cataggtaccgacaagcttttgaggaatctacttcaaagctttgtcaagaagaatttaaaatatctttgcactggttgaattcccctatagcaattccat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38469068 |
cataggtaccgacaagcttttgaggaatctact-caaagctttgtcaagaagaatttaaaatatctttgcactggttgaattcccctatagcaattccat |
38468970 |
T |
|
| Q |
117 |
caaccaagcaatgagatcaagaagttgtgtgagcaatttcatgcaataatctaaaaaataaattaagatataaaactaagtttgacaaacattgtaggct |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38468969 |
caaccaagcaatgagatcaagaagttgcgtgagcaatttcatgcaataatctaaaaaataaattaagatataaaactaagtttgacaaacattgtaggct |
38468870 |
T |
|
| Q |
217 |
gcacactttcatagaaggagacctggtaaggatacacatgcgaaaagaacaattttttaatcaaccaaatgccaatgattccttaacagatgatggtttg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38468869 |
gcacactttcatagaaggagacctggtaaagatacacatgcgaaaagaacaattttttaatcaaccaaatgccaatgattccttaacagatgatggtttg |
38468770 |
T |
|
| Q |
317 |
ttcagagttgtgcataa |
333 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38468769 |
ttcagagttgtgcataa |
38468753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 38468210 - 38468134
Alignment:
| Q |
257 |
cgaaaagaacaattttttaatcaaccaaatgccaatgattccttaacagatgatggtttgttcagagttgtgcataa |
333 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
38468210 |
cgaaaggaacaatttttaaatcaactaaatgccaagatttcctcaacagatgatggtttgttcaaagttgtgcataa |
38468134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University