View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2242_high_6 (Length: 315)

Name: NF2242_high_6
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2242_high_6
NF2242_high_6
[»] chr3 (24 HSPs)
chr3 (1-303)||(5160110-5160408)
chr3 (1-265)||(5156080-5156341)
chr3 (11-303)||(46479635-46479924)
chr3 (4-265)||(46490547-46490805)
chr3 (77-277)||(51943801-51943998)
chr3 (78-265)||(46483960-46484144)
chr3 (22-303)||(46473785-46474063)
chr3 (24-265)||(46497803-46498044)
chr3 (1-295)||(46531754-46532045)
chr3 (108-303)||(47414184-47414376)
chr3 (215-302)||(45883727-45883814)
chr3 (1-139)||(46544292-46544430)
chr3 (9-265)||(45902797-45903050)
chr3 (182-300)||(46236791-46236909)
chr3 (18-136)||(46549142-46549260)
chr3 (1-75)||(51942965-51943039)
chr3 (78-139)||(46538897-46538958)
chr3 (9-139)||(46526577-46526707)
chr3 (183-265)||(46526454-46526536)
chr3 (1-135)||(46554343-46554477)
chr3 (18-139)||(46236949-46237070)
chr3 (183-265)||(46549016-46549098)
chr3 (183-265)||(47397337-47397419)
chr3 (228-300)||(46554178-46554250)
[»] chr4 (5 HSPs)
chr4 (88-298)||(35162361-35162567)
chr4 (90-300)||(35155342-35155549)
chr4 (6-130)||(15555852-15555976)
chr4 (227-303)||(15556070-15556146)
chr4 (8-57)||(35155260-35155309)
[»] chr2 (4 HSPs)
chr2 (19-265)||(20169061-20169304)
chr2 (19-265)||(20358982-20359223)
chr2 (19-265)||(20144470-20144713)
chr2 (91-130)||(20141802-20141841)
[»] chr8 (3 HSPs)
chr8 (8-300)||(9675690-9675979)
chr8 (1-264)||(9692748-9693008)
chr8 (180-302)||(21464182-21464304)
[»] chr7 (4 HSPs)
chr7 (6-139)||(17744948-17745081)
chr7 (6-51)||(16721990-16722035)
chr7 (6-51)||(17699004-17699049)
chr7 (1-303)||(17735762-17736061)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 5160110 - 5160408
Alignment:
1 ttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttca 100  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
5160110 ttgataggttaaccagactcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgtttcgaaaacgaaagactatgattttca 5160209  T
101 ccttttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccg 200  Q
    |||||||||||| ||||| ||||||||||||||||||||   |||  ||||||  ||||||||| |||||||| ||||||||||||||||||||||||||    
5160210 ccttttgaatgg-agctcagtcaaggttcccttcatgac---cagcgaggagaatcagtttattgaagcttatgacgactttaaagttcttcgtcttccg 5160305  T
201 tataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttctgaat 300  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
5160306 tataagaaaggcaaagataagcgtccattctctatgtacattttccttccaaatgcaaaagatggcttgtcgactttggttaagaaggtggcttctgaat 5160405  T

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Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 5156080 - 5156341
Alignment:
1 ttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
5156080 ttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgagaagtttgatgttttgaaaacgaaagactatgattttca 5156179  T
101 ccttttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccg 200  Q
    ||||||||||||||||||||||||||||||||||||   ||||||  ||||||  ||||||||| ||||||||   | ||||||||||||||||||||||    
5156180 ccttttgaatggcagctcggtcaaggttcccttcat---gaccagcgaggagaatcagtttattgaagcttatggtggctttaaagttcttcgtcttccg 5156276  T
201 tataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    ||||| |||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||    
5156277 tataaaaaaggcaaagataagcgtcgattctctatgtacatttttcttccaaatgctaaagatgg 5156341  T

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Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 46479635 - 46479924
Alignment:
11 aacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttgaat 110  Q
    |||||| ||||||||||| |||||||| ||||| |||||||| |||| |||||||||||||| ||  |||||| ||||||| || |||||||||||||||    
46479635 aacccggctcatctttgccaatgcactatacttcaaaggagcgtggaatgataagtttgatgcttcaaaaacggaagactacgagtttcaccttttgaat 46479734  T
111 ggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtataagaaag 210  Q
    || ||| | |||||||||||||||||   |||||| ||| ||| ||||||||||| ||||| | | |  |||||||||||  ||||||| |||||| |||    
46479735 ggtagcccagtcaaggttcccttcat---gaccagcaagaagaagcagtttattagagcttttgatggttttaaagttctcggtcttccttataagcaag 46479831  T
211 gcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttctgaatctg 303  Q
    || ||||||||| || |||| | |||||| |||| |||||||||||||||||||| ||| | ||||||||  | |||||||||||||||||||    
46479832 gcgaagataagcgtcaattcaccatgtacttttttcttccaaatgcaaaagatgggttggcagctttggtcgaaaaggtggcttctgaatctg 46479924  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 4 - 265
Target Start/End: Original strand, 46490547 - 46490805
Alignment:
4 atagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcacct 103  Q
    ||||||||||| | || ||| ||||||||||||| ||||| |||||||  |||| |||||||||||||| ||  ||||||||||||||||||||||||||    
46490547 atagcttaaccaggctaatcattgctaatgcactatacttcaaaggagtgtggaatgataagtttgatgcttcaaaaacgaaagactatgattttcacct 46490646  T
104 tttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtat 203  Q
    |||||||||||||||  | ||||||||||||||   ||| || |||||    || | ||||| |||||   | || |||||||||||| | ||||| |||    
46490647 tttgaatggcagctcaattaaggttcccttcat---gactagcaaggaagaacaatatattagagctttcgatgattttaaagttcttggccttccttat 46490743  T
204 aagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    ||| ||||| ||||||||| |  |||  |||||||| |||| ||||||||||||||||||||    
46490744 aagcaaggcgaagataagcgtgaatttactatgtacttttttcttccaaatgcaaaagatgg 46490805  T

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Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 77 - 277
Target Start/End: Original strand, 51943801 - 51943998
Alignment:
77 gaaaacgaaagactatgattttcaccttttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataac 176  Q
    |||||| ||||| ||||||||||||||| | ||||| ||||| ||||||||||||||||||||   ||| ||  ||| |||||||||| ||| |||| |     
51943801 gaaaactaaagattatgattttcaccttctaaatggtagctcagtcaaggttcccttcatgac---cagcaataagaagcagtttattgaagtttatgat 51943897  T
177 gactttaaagttcttcgtcttccgtataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctt 276  Q
    || ||||||||||||| |||||| |||||||||||  |||||||||  | ||||||||||||  |||| |||||||||||||||||||| ||||| ||||    
51943898 gattttaaagttcttcatcttccttataagaaaggtgaagataagcgccaattctctatgtatttttttcttccaaatgcaaaagatgggttgtcagctt 51943997  T

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Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 265
Target Start/End: Original strand, 46483960 - 46484144
Alignment:
78 aaaacgaaagactatgattttcaccttttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacg 177  Q
    ||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||| | ||   || ||| ||||||||||| ||||| | | |    
46483960 aaaacaaaagactatgattttcaccttctcaatggcagctcagtcaaggttccctttatgactagca---agaagaagcagtttattagagcttttgatg 46484056  T
178 actttaaagttcttcgtcttccgtataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
      |||||||||||| ||||||| |||||| ||||| ||||||||| ||  ||| |||||||| |||| ||||||||||||||||||||    
46484057 gttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatgg 46484144  T

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Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 46473785 - 46474063
Alignment:
22 tctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagctcggt 121  Q
    |||||||||||||| | || ||||||||| |||||| | | ||| |||||| ||  | ||| ||||||||||||||| ||||| | ||||||||||| ||    
46473785 tctttgctaatgcattgtattttaaaggatcatggaatcagaagattgatgcttcaacaacaaaagactatgatttttaccttctcaatggcagctcagt 46473884  T
122 caaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtataagaaaggcaaagataag 221  Q
     |||||| |||| ||||| | ||   || ||| ||||||||||| ||||| | | |  |||||||||||| ||||||| |||||| ||||| ||||||||    
46473885 taaggtttcctttatgactagca---agaagaagcagtttattagagcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataag 46473981  T
222 cttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttctgaatctg 303  Q
    | ||  ||| |||||||| |||| ||||||||||||||||||||  |  |   ||||||| | |||||||||||||||||||    
46473982 cgtcgtttcactatgtacttttttcttccaaatgcaaaagatgggcttccaagtttggttgaaaaggtggcttctgaatctg 46474063  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 265
Target Start/End: Original strand, 46497803 - 46498044
Alignment:
24 tttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagctcggtca 123  Q
    |||||||||||||| |||||||||||||  |||| |||||| ||||||| || | ||||||| | |||||||||||||||||||||||| | ||| || |    
46497803 tttgctaatgcactatactttaaaggagagtggaatgataattttgatgcttcggaaacgaatgtctatgattttcaccttttgaatggaaactcagtta 46497902  T
124 aggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtataagaaaggcaaagataagct 223  Q
    |||||  ||||||||| |      || ||| ||||||||||| || ||   | || |||||||||||| | ||||| |||||| ||||| |||| ||||     
46497903 aggttgacttcatgactagtgatgagaagaagcagtttattagagatttcgatgattttaaagttcttggccttccttataagcaaggcgaagacaagcg 46498002  T
224 tccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    || |||  | |||||| |||| ||||||||||||||||||||    
46498003 tcaatttacgatgtacttttttcttccaaatgcaaaagatgg 46498044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 46531754 - 46532045
Alignment:
1 ttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttca 100  Q
    |||||||||||||  | ||||| ||||||||||||||||||||||| |||||||||  | |    ||||||| ||  ||||| |||||| ||||||||||    
46531754 ttgatagcttaactggactcatttttgctaatgcactctactttaatggagcatggcatcaaccatttgatgcttcaaaaacaaaagaccatgattttca 46531853  T
101 ccttttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccg 200  Q
    |||| |   |||||||||  | ||||||||||||||   ||| || ||| ||| ||||||||| || |||| | | |  |||||  | |||||||||||     
46531854 ccttctcggtggcagctcaattaaggttcccttcat---gactagcaagaagaagcagtttataaatgcttttgatggttttaagatccttcgtcttcct 46531950  T
201 tataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttc 295  Q
    |||||| ||||||| ||||  | || ||||||||||||| |||| |||||  ||||| ||||||| ||||  |||||| || | || ||||||||    
46531951 tataagcaaggcaacgatattcgtcaattctctatgtacttttttcttcccgatgcacaagatggattgttagctttgattgagaaagtggcttc 46532045  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 303
Target Start/End: Complemental strand, 47414376 - 47414184
Alignment:
108 aatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtataaga 207  Q
    ||||| ||||| |||||||||||||||||||| |   ||   |||| ||||||||||  ||||| | | || |||||||||||| | ||||| ||||| |    
47414376 aatggaagctcagtcaaggttcccttcatgaccaatgga---gagaagcagtttattggagcttttgatgattttaaagttctttgccttccttataata 47414280  T
208 aaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttctgaatctg 303  Q
    ||||  |||||| ||    |||||||||||||||||| ||||||||  ||| ||||||  |||| ||||||||| | |||||||||||||||||||    
47414279 aaggagaagatacgcggaaattctctatgtacatttttcttccaaacacaagagatggactgtcagctttggttgagaaggtggcttctgaatctg 47414184  T

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Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 302
Target Start/End: Complemental strand, 45883814 - 45883727
Alignment:
215 agataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttctgaatct 302  Q
    |||||||| || ||||||||||||| |||| ||||||||||||||||||||  |||| ||||||||  | ||||||||||||||||||    
45883814 agataagcgtcgattctctatgtacttttttcttccaaatgcaaaagatggactgtcagctttggtcgagaaggtggcttctgaatct 45883727  T

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Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 46544292 - 46544430
Alignment:
1 ttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttca 100  Q
    ||||||||||||||  |||||||||||| || ||||| ||||| ||||||||||||   ||  ||||||||  ||  ||||| ||||||||||||||| |    
46544292 ttgatagcttaaccaacctcatctttgcaaacgcactatacttcaaaggagcatggtcggaggagtttgatacttcaaaaacaaaagactatgattttaa 46544391  T
101 ccttttgaatggcagctcggtcaaggttcccttcatgac 139  Q
    |||| | |||||||||   ||||||||||| ||||||||    
46544392 ccttctcaatggcagccaagtcaaggttcctttcatgac 46544430  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 45902797 - 45903050
Alignment:
9 ttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttga 108  Q
    |||||| | |||||||||||||| ||| | || ||||||||||||||||   |||||||| ||| || ||  ||  || ||||| ||||| ||||| | |    
45902797 ttaaccagactcatctttgctaacgcattgtattttaaaggagcatggaaaaataagtttcatgcttcgaggacacaaaactataatttttaccttctaa 45902896  T
109 atggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtataagaa 208  Q
    |||| ||||| |||||||||||||||||   ||||||  || ||| |||||||||    | ||   | |  || ||||| ||||||||||| ||| || |    
45902897 atggtagctcagtcaaggttcccttcat---gaccagcgagaagaggcagtttatccgcgttttcgatggtttcaaagtacttcgtcttccttatgagca 45902993  T
209 aggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    |||  ||||||||| || |||||||||||| ||||| |||||||| |||||||||||    
45902994 aggagaagataagcgtcaattctctatgtatatttttcttccaaaagcaaaagatgg 45903050  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 300
Target Start/End: Complemental strand, 46236909 - 46236791
Alignment:
182 taaagttcttcgtcttccgtataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggtt 281  Q
    ||||||||||  |||||| |||||  ||||||||||| ||  || |||||||||||| ||||| |||||| ||||||||||||| |||||  | ||||||    
46236909 taaagttctttatcttccttataatcaaggcaaagatgagtgtcaattctctatgtatatttttcttccagatgcaaaagatgggttgtcaaccttggtt 46236810  T
282 aataaggtggcttctgaat 300  Q
     | ||| ||||||||||||    
46236809 gagaagctggcttctgaat 46236791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 46549260 - 46549142
Alignment:
18 ctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagct 117  Q
    ||||||||||| |||||| | ||||| ||||||||||||  ||| |||||| ||  | || | | | |||  ||||||||||||||| | ||||||||||    
46549260 ctcatctttgcaaatgcattatacttcaaaggagcatgggatgagaagtttaatactatggacatggaaggatatgattttcaccttctcaatggcagct 46549161  T
118 cggtcaaggttcccttcat 136  Q
    |||||||||||||||||||    
46549160 cggtcaaggttcccttcat 46549142  T

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Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 51942965 - 51943039
Alignment:
1 ttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttt 75  Q
    |||||||||||||  |||||||||||||||||||  | ||||||| ||||||||||| ||| |||||||||||||    
51942965 ttgatagcttaactagcctcatctttgctaatgcgttgtactttagaggagcatggaatgagaagtttgatgttt 51943039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 46538897 - 46538958
Alignment:
78 aaaacgaaagactatgattttcaccttttgaatggcagctcggtcaaggttcccttcatgac 139  Q
    ||||| ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||    
46538897 aaaacaaaagactatgattttaaccttcttaatggcagctcagtcaaggttcccttcatgac 46538958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 46526707 - 46526577
Alignment:
9 ttaacccgcctcatctttgctaatgcactctacttt-aaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttg 107  Q
    |||||| | ||||||||||| || ||||| || ||| |||||||||||||   | ||||||  || || || ||| ||| ||||||||||||||||||      
46526707 ttaaccagactcatctttgcaaacgcactgtatttttaaaggagcatggaaaaagaagtttcctgcttcgagaacaaaaaactatgattttcaccttta- 46526609  T
108 aatggcagctcggtcaaggttcccttcatgac 139  Q
    ||||||||||| ||||||||||||||||||||    
46526608 aatggcagctcagtcaaggttcccttcatgac 46526577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 46526536 - 46526454
Alignment:
183 aaagttcttcgtcttccgtataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    ||||| || |||||||| |||||| ||||  ||||||||| || |||||||||||||||||| |||||||  |||| ||||||    
46526536 aaagtactccgtcttccttataagcaaggagaagataagcgtcaattctctatgtacatttttcttccaagagcaagagatgg 46526454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 46554477 - 46554343
Alignment:
1 ttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttca 100  Q
    ||||||| |||||| | ||||| |||||||||||||| || |||||||| ||||||  | |   |||||| | ||   |||| |||||||||||||||||    
46554477 ttgatagtttaaccagactcatttttgctaatgcactatattttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttca 46554378  T
101 ccttttgaatggcagctcggtcaaggttcccttca 135  Q
    |||| |  |||| |||||  |||||||||||||||    
46554377 ccttcttgatggtagctcattcaaggttcccttca 46554343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 46237070 - 46236949
Alignment:
18 ctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagct 117  Q
    ||||| ||||| |||||| | ||||||||||||  ||||| ||| |||||||||  || |  ||||||||||  ||| | | ||||||| ||||| ||||    
46237070 ctcatatttgcaaatgcaatgtactttaaaggaatatggaatgagaagtttgatacttcggtaacgaaagacagtgactgttaccttttaaatggtagct 46236971  T
118 cggtcaaggttcccttcatgac 139  Q
    | ||||| ||||||||||||||    
46236970 ccgtcaaagttcccttcatgac 46236949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 46549098 - 46549016
Alignment:
183 aaagttcttcgtcttccgtataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    |||||||||  |||||| |||||  |||| |||||||| |  | ||||||||||||| |||| ||||||||| ||||||||||    
46549098 aaagttctttatcttccttataaataaggaaaagataaacgacaattctctatgtacttttttcttccaaatacaaaagatgg 46549016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 47397419 - 47397337
Alignment:
183 aaagttcttcgtcttccgtataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    ||||| ||||||||| | |||| | ||||  |||||||||  |  ||||| ||||||||||| ||||||||||||||||||||    
47397419 aaagtacttcgtctttcttataggcaaggtgaagataagcgccatttctccatgtacatttttcttccaaatgcaaaagatgg 47397337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 46554250 - 46554178
Alignment:
228 ttctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttctgaat 300  Q
    |||||||||||| |||| |||||  ||||||||||||| ||||| |||||| || | || |||||||| ||||    
46554250 ttctctatgtactttttacttcccgatgcaaaagatgggttgtcagctttgattgagaaagtggcttcggaat 46554178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 88 - 298
Target Start/End: Original strand, 35162361 - 35162567
Alignment:
88 actatgattttcaccttttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagt 187  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||  |    ||| |||||||||| ||||| | | |  ||||||||    
35162361 actatgattttcaccttctgaatggaagctcagtcaaggttcccttcatgactacca--accttgat-cagtttattagagcttttgatggttttaaagt 35162457  T
188 tcttcgtcttccgtataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataag 287  Q
    |||||||||||| |||||| |||| |||||| |||    ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| | |||    
35162458 tcttcgtcttccttataagcaaggaaaagatgagcggaaattctctatgtacattttc-ttccaaatgcaaaagatggcctgtcagctttggttgagaag 35162556  T
288 gtggcttctga 298  Q
    |||||||||||    
35162557 gtggcttctga 35162567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 90 - 300
Target Start/End: Original strand, 35155342 - 35155549
Alignment:
90 tatgattttcaccttttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttc 189  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||    ||    || ||||||| ||||| | | |  ||||||||||    
35155342 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgat---caatttattagagcttttgatggttttaaagttc 35155438  T
190 ttcgtcttccgtataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggt 289  Q
    ||||||||||||||||| |||| |||||| |||    |||||||||||||||||| ||||||||||||||||||||  | || ||||||||| | |||||    
35155439 ttcgtcttccgtataagcaaggaaaagatgagcggaaattctctatgtacatttttcttccaaatgcaaaagatggactatcagctttggttgagaaggt 35155538  T
290 ggcttctgaat 300  Q
    |||||||||||    
35155539 ggcttctgaat 35155549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 15555852 - 15555976
Alignment:
6 agcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttt 105  Q
    ||||||||| | ||||||||||| |||||||| ||||||||||||  ||||  | | |||||||||| ||  |||||||||||||||||||||||||||     
15555852 agcttaaccagactcatctttgcaaatgcactgtactttaaaggactatggtatcagaagtttgatgcttccaaaacgaaagactatgattttcaccttc 15555951  T
106 tgaatggcagctcggtcaaggttcc 130  Q
    | ||||| |||||  ||||||||||    
15555952 tcaatggtagctcactcaaggttcc 15555976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 15556070 - 15556146
Alignment:
227 attctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttctgaatctg 303  Q
    ||||||||| ||| || | |||||| |||||||||||||  | |||||||||||| | ||||||||||| |||||||    
15556070 attctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctg 15556146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 35155260 - 35155309
Alignment:
8 cttaacccgcctcatctttgctaatgcactctactttaaaggagcatgga 57  Q
    ||||||| | |||||||||||||||||||| || ||||||||||| ||||    
35155260 cttaaccagactcatctttgctaatgcactgtattttaaaggagcttgga 35155309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 20169304 - 20169061
Alignment:
19 tcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagctc 118  Q
    ||||||||||||||||| | ||||||| ||||||||||| ||| ||||| ||  |||  |||||  || ||| ||||||||| ||||||||||| | |||    
20169304 tcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaaaactgtgattttcatcttttgaatggaaactc 20169205  T
119 ggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtataagaaaggcaaagat 218  Q
     ||||||||||| ||||||   | ||   || ||||||| |||||| |||||||| |||  | |||||||||||||||||| ||||| |||||  |||||    
20169204 agtcaaggttcctttcatggtaagca---agaagatgcaatttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagat 20169108  T
219 aagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    | || || |||||||||||| |||||  | ||||| |||||||||||    
20169107 acgcgtcaattctctatgtatatttttttgccaaacgcaaaagatgg 20169061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 20358982 - 20359223
Alignment:
19 tcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagctc 118  Q
    ||||||||||||||||| | ||||||| ||||||||||| ||| ||||| ||  |||  |||||  ||  || ||||||||| ||||||||||| | |||    
20358982 tcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaa--ctgtgattttcatcttttgaatggaaactc 20359079  T
119 ggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtataagaaaggcaaagat 218  Q
     ||||||||||| ||||||   | ||   || |||||||||||||| |||||||| |||  | |||||||||||||||||| ||||| |||||  |||||    
20359080 agtcaaggttcctttcatggtaagca---agaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagat 20359176  T
219 aagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    | || || |||||||||||| |||||  | ||||| |||||||||||    
20359177 acgcgtcaattctctatgtatatttttttgccaaacgcaaaagatgg 20359223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 20144470 - 20144713
Alignment:
19 tcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagctc 118  Q
    ||||||||||||||||| | ||||||| ||||||||||| ||| ||||| ||  |||  |||||  || ||  ||||||||| ||||||||||| | |||    
20144470 tcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttcaaaaacagaaaacagtgattttcatcttttgaatggaaactc 20144569  T
119 ggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtataagaaaggcaaagat 218  Q
     ||||||||||| ||||||   | ||   || |||||||||||||| |||||||| |||  | |||||||||||||||||| ||||| |||||  |||||    
20144570 agtcaaggttcctttcatggtaagca---agaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagat 20144666  T
219 aagcttccattctctatgtacattttccttccaaatgcaaaagatgg 265  Q
    | || || |||||||||||| |||||  | || || |||||||||||    
20144667 acgcgtcaattctctatgtatatttttttgcctaacgcaaaagatgg 20144713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 20141841 - 20141802
Alignment:
91 atgattttcaccttttgaatggcagctcggtcaaggttcc 130  Q
    |||||||||||||||||||||| ||||| |||||||||||    
20141841 atgattttcaccttttgaatggaagctccgtcaaggttcc 20141802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 9675979 - 9675690
Alignment:
8 cttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttttg 107  Q
    ||||||| | |||||||||||||||||||| || |||||||||| ||||  |||| | |||  || ||  || ||  || ||||||||||||||||| ||    
9675979 cttaaccagactcatctttgctaatgcactatattttaaaggagaatgggttgatcaattttttgattataataccgaaaactatgattttcaccttctg 9675880  T
108 aatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccgtataaga 207  Q
    ||||||||||| ||||| |||||||| ||||  ||||  |    ||| |||||||||| ||||| | | |  |||||||| ||| |||| || ||| ||     
9675879 aatggcagctcagtcaaagttccctttatgagcacca--accttgat-cagtttattagagcttttgatggttttaaagtgctttgtctcccttatgagc 9675783  T
208 aaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttctgaat 300  Q
    ||||   ||||||||  | |||||||||||||||||| |||||||||||||||| |||  | |||||| ||||| | ||||||||||||||||    
9675782 aaggtggagataagcgacaattctctatgtacatttttcttccaaatgcaaaaggtggactatcggctatggttgaaaaggtggcttctgaat 9675690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 9693008 - 9692748
Alignment:
1 ttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttca 100  Q
    |||| ||||||||| | |||||||||||||||||| | || |||||||||||||||||| ||   |||  || || ||  || |  || |||||||||||    
9693008 ttgacagcttaaccagactcatctttgctaatgcattgtattttaaaggagcatggagtaatccttttcctgcttggaggacaagcgaatatgattttca 9692909  T
101 ccttttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccg 200  Q
    ||||  |||||||||||| ||||||||||| || ||||  | ||  |    ||| |||||||||| ||||| | | |  ||||||||||||||||||||     
9692908 ccttccgaatggcagctcagtcaaggttccttttatgagcagca--accttgat-cagtttattagagcttttgatggttttaaagttcttcgtcttcct 9692812  T
201 tataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatg 264  Q
    |||||  |||| ||| ||||||  | |||||||||||||||||| |||||||||||||||||||    
9692811 tataattaaggaaaaaataagcgacaattctctatgtacatttttcttccaaatgcaaaagatg 9692748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 302
Target Start/End: Complemental strand, 21464304 - 21464182
Alignment:
180 tttaaagttcttcgtcttccgtataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttgg 279  Q
    |||||||| ||||||||||| |||| | ||||  |||| || | || |||||| || ||| |||| |||||  ||||||||||||| ||||  ||||||     
21464304 tttaaagtccttcgtcttccttatacgcaaggtgaagacaaacatcgattctcaatttacttttttcttcctgatgcaaaagatggattgttagctttga 21464205  T
280 ttaataaggtggcttctgaatct 302  Q
    |||| ||||| ||||| ||||||    
21464204 ttaagaaggttgcttccgaatct 21464182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 17744948 - 17745081
Alignment:
6 agcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttcaccttt 105  Q
    ||||||||| |||| ||||||||||||||||| ||||| ||||||| |||||   | |||||||||  ||  |||||||| |||||||||||| |||||     
17744948 agcttaaccagcctaatctttgctaatgcactatacttcaaaggagtatggaaacaaaagtttgatacttcaaaaacgaaggactatgattttgaccttc 17745047  T
106 tgaatggcagctcggtcaaggttcccttcatgac 139  Q
    | || ||||  || || ||||||||||| |||||    
17745048 ttaacggcaagtcagtaaaggttccctttatgac 17745081  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 16721990 - 16722035
Alignment:
6 agcttaacccgcctcatctttgctaatgcactctactttaaaggag 51  Q
    |||||||||||||||||||||||||||||||| || || |||||||    
16721990 agcttaacccgcctcatctttgctaatgcactatatttcaaaggag 16722035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 17699004 - 17699049
Alignment:
6 agcttaacccgcctcatctttgctaatgcactctactttaaaggag 51  Q
    |||||||||||||||||||||||||||||||| || || |||||||    
17699004 agcttaacccgcctcatctttgctaatgcactatatttcaaaggag 17699049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 17735762 - 17736061
Alignment:
1 ttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgttttgaaaacgaaagactatgattttca 100  Q
    |||| ||||||||| ||||||||||||| |||||||| ||||| |||||||  ||||       |||||||  ||  |||||||| |||||||||||| |    
17735762 ttgacagcttaaccagcctcatctttgcgaatgcactatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttga 17735861  T
101 ccttttgaatggcagctcggtcaaggttcccttcatgacgaccagaaaggagatgcagtttattaaagcttataacgactttaaagttcttcgtcttccg 200  Q
    |||| | |||||||  || || ||||||||||| ||   |||||| ||| | |  |||||||| |   ||| | | |  |||||||| ||| |||||||     
17735862 ccttctcaatggcaagtcagtaaaggttccctttat---gaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttcct 17735958  T
201 tataagaaaggcaaagataagcttccattctctatgtacattttccttccaaatgcaaaagatggcttgtcggctttggttaataaggtggcttctgaat 300  Q
    || ||  ||||||| ||||||| | |||||||||| ||| |||| |||||  | | ||||||||| ||||| |||||| || |||| || |||||||| |    
17735959 tacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagtagcttctgatt 17736058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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