View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242_high_7 (Length: 301)
Name: NF2242_high_7
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242_high_7 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 883627 - 883899
Alignment:
| Q |
1 |
cacatacacgaacattagacaatcgatacaaataataattttaaaaagttacataattcaatgtgattatatgtgtaagtgctgtgttggtatcaaacaa |
100 |
Q |
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| T |
883627 |
cacatacacgaacattagacaatcgatacaaataataattttaaaaagttacataattcaatgtgactacatttgtcagtgttgtattggtatcaaacaa |
883726 |
T |
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| Q |
101 |
gatgagtgtctgagtttcataggctaaatgctaactaacctcttggtagaatttggagagtctttttacgtcggtggactctcgagctatatggttcaga |
200 |
Q |
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| T |
883727 |
gatga----------ttcataggttaaatgctaactaacctcttggtagaatttggagagtctttttacgtcggtggactctcgagctatatggttcaga |
883816 |
T |
|
| Q |
201 |
ctcactccttctgctgcagccatttcttctatcttttctagagaaaatatttctattgatttggaaacaataatggtggtgac |
283 |
Q |
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| T |
883817 |
ctcactccttctgctgcagccatttcttctatcttttctagagaaaatatttctattgatttggaaacaataatggtggtgac |
883899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 38749615 - 38749571
Alignment:
| Q |
32 |
ataataattttaaaaagttacataattcaatgtgattatatgtgt |
76 |
Q |
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| T |
38749615 |
ataataatttgaaaaaatgacataattcaatgtaattatatgtgt |
38749571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 99900 - 99944
Alignment:
| Q |
32 |
ataataattttaaaaagttacataattcaatgtgattatatgtgt |
76 |
Q |
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| T |
99900 |
ataataattttagaaaataacataattcaatgtaattatatgtgt |
99944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 3677783 - 3677835
Alignment:
| Q |
22 |
atcgatacaaataataattttaaaaagttacataattcaatgtgattatatgt |
74 |
Q |
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||||| |||| ||||||||||||||| | ||||||||| |||| ||||||||| |
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| T |
3677783 |
atcgacacaattaataattttaaaaaatcacataattctatgtaattatatgt |
3677835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 18013125 - 18013077
Alignment:
| Q |
33 |
taataattttaaaaagttacataattcaatgtgattatatgtgtaagtg |
81 |
Q |
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| T |
18013125 |
taataatttaaaaaaattacataattcagtgtaattatatgtgtcagtg |
18013077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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