View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2242_high_9 (Length: 250)

Name: NF2242_high_9
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2242_high_9
NF2242_high_9
[»] chr8 (2 HSPs)
chr8 (170-245)||(12811969-12812044)
chr8 (1-87)||(12812127-12812215)
[»] chr2 (2 HSPs)
chr2 (179-234)||(30642907-30642962)
chr2 (177-240)||(5546365-5546428)
[»] chr7 (2 HSPs)
chr7 (170-245)||(28470206-28470281)
chr7 (192-245)||(5230011-5230064)
[»] chr3 (1 HSPs)
chr3 (174-235)||(47271129-47271190)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 12812044 - 12811969
Alignment:
Q  170 ccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgctgct 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12812044 ccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgct 12811969  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 12812215 - 12812127
Alignment:
Q  1 tcatttctcactacaaaaatttatattctctctcnnnnnnn--ccatattgcactaaatcactataaataaagttagagtttatttctt 87  Q
    |||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||    
T  12812215 tcatttctcactacaaaaatttatattctctctttttttttttccatattgcactaaatcactataaataaagttagagtttatttctt 12812127  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 30642962 - 30642907
Alignment:
Q  179 aactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttc 234  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  30642962 aactttctcaaagagaagaaatggtttgctcaaaaaagcttatgaactgtctgttc 30642907  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 5546365 - 5546428
Alignment:
Q  177 gtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtg 240  Q
    ||||||||||  |||||||||||||||||| | |||||||| |||||| | |||||||| ||||    
T  5546365 gtaactttctgcaaaagaagaaatggtttgttgaagaaagcatatgaattatctgttctttgtg 5546428  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 28470206 - 28470281
Alignment:
Q  170 ccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgctgct 245  Q
    |||||| || ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||| ||||    
T  28470206 ccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgct 28470281  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 5230011 - 5230064
Alignment:
Q  192 agaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgctgct 245  Q
    |||||||||||| | || ||||||||||||||||| |||||||| |||| ||||    
T  5230011 agaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgct 5230064  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 47271190 - 47271129
Alignment:
Q  174 caggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttct 235  Q
    ||||| ||||||||||| ||||| ||||||||  ||||||||||||||||||| ||||||||    
T  47271190 caggttactttctcaaagagaaggaatggtttaatcaagaaagcttatgaactttctgttct 47271129  T

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