View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2242_low_1 (Length: 533)
Name: NF2242_low_1
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Complemental strand, 47119632 - 47119150
Alignment:
| Q |
16 |
atgaaatgaaggtaacatggacaaatgagattggatagacacaactatcgctgagtcagcttttcacattgttgtaataagccgagtttgaggtggggtc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47119632 |
atgaaatgaaggtaacatggacaaatgagattggatagacacaactatcgctgagtcagcttttcacattgttgtaataagccgagtttgaggtggggtc |
47119533 |
T |
|
| Q |
116 |
cacaaaatgggcgcgtttcctaactaccgtacccgcggaaattatctgcatggacgattatgtccttgtgaagtcatcgttcgttggtacatacatacag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47119532 |
cacaaaatgggcgcgtttcctaactaccgtacccgcggaaattatctgcatggacgattatgtccttgtgaagtcatcgttcgttggtaca----tacag |
47119437 |
T |
|
| Q |
216 |
gtcaattcacgacaaaggctatctcatcagcatattccttcctatgtcatgataagtactcaatcattttttaaacgtgttattttatataaatgagttg |
315 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47119436 |
gtcaattcacgacaaaggttatctcatcagcatattccttcctatgtcatg--------------attttttaaacgtgttattttatataaatgagttg |
47119351 |
T |
|
| Q |
316 |
tttac-tttttgtaaaaatcgattaatttttaaaatatatataag-aaaacataatttgatattcattcgttgtgaaaattttaagctatcaaatagggg |
413 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47119350 |
tttacttttttgtaaaaatcgattaatttttaaaatatatataagaaaaacataatttgatattcattcgctgtgaaaattttaagctatcaaatagggg |
47119251 |
T |
|
| Q |
414 |
aacttctgttaatgcattatcaatattagtagtagttccttctattaatgcattgatattaaaacttatgaaacagatgtaagaaggggacaaaataggg |
513 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47119250 |
aacttctgttaatgcatcatcaatattagtagtagttccttctattaatgcattgatattaaaacttaggaaacagatgtaagaaggggacaaaataggg |
47119151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University