View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2242_low_11 (Length: 237)
Name: NF2242_low_11
Description: NF2242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2242_low_11 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 25653929 - 25654104
Alignment:
| Q |
67 |
ttcatcttcattagttcctttaactccaaaattttatcatcttattttgtcattatttcactccctttcactccaaaatcttatcatc------------ |
154 |
Q |
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| T |
25653929 |
ttcattttcatcagttcctttaactccaaaattttatcatcttattttgtcattatttcactccctttcactccaaaatcttatcatcttcatcagttca |
25654028 |
T |
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| Q |
155 |
--tttgttcatacccttcgctc-aaaaattcatctggtccaacaccaaccatacctttaatcacttccgtcctttg |
227 |
Q |
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|||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25654029 |
aatttgttcataccttttactcaaaaaattcatctggtccaacaccatccatacctttaatcacttccgtcctttg |
25654104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25653839 - 25653920
Alignment:
| Q |
1 |
ttcatctgtgagcttttcatctccttcatcttttcatcatcaaaatcgtaaatctttcgaatccctttcatcttcattagtt |
82 |
Q |
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| T |
25653839 |
ttcatctctgagcttttcatctccttcatcttttcatcatcaaaatcgtaaatctttcgaatctcattcatcttcatcagtt |
25653920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 33752833 - 33752760
Alignment:
| Q |
9 |
tgagcttttcatctccttcatcttttcatcatcaaaatcgtaaatctttcgaatccctttcatcttcattagtt |
82 |
Q |
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| T |
33752833 |
tgagcttttcatctccttcatcttttcatcatcaaaatcataaatctttcgagtccctttcatcttcatcagtt |
33752760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 33848472 - 33848399
Alignment:
| Q |
9 |
tgagcttttcatctccttcatcttttcatcatcaaaatcgtaaatctttcgaatccctttcatcttcattagtt |
82 |
Q |
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| T |
33848472 |
tgagcttttcatctccttcatcttttcatcatcaaaatcataaatctttcgagtccctttcatcttcatcagtt |
33848399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 28293014 - 28292926
Alignment:
| Q |
67 |
ttcatcttcattagttcctttaactccaaaattttatcatcttattttgtcattatttcactccctttcactccaaaatcttatcatctt |
156 |
Q |
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||||||||||| | || |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
28293014 |
ttcatcttcatcaatttctttcactccaaaatcttatcatcttattttgtcattatttca-ttcctttcactccaaaatcttatcatctt |
28292926 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 47870478 - 47870531
Alignment:
| Q |
156 |
ttgttcatacccttcgctcaaaaattcatctggtccaacaccaaccataccttt |
209 |
Q |
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| T |
47870478 |
ttgttcataccattcactctaaaattcatctgctccaacaccaaccataccttt |
47870531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34491386 - 34491350
Alignment:
| Q |
1 |
ttcatctgtgagcttttcatctccttcatcttttcat |
37 |
Q |
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| T |
34491386 |
ttcatctatgagcttttcatctccttcatcttttcat |
34491350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 65362 - 65395
Alignment:
| Q |
176 |
aaaattcatctggtccaacaccaaccataccttt |
209 |
Q |
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| T |
65362 |
aaaattcatctgctccaacaccaaccataccttt |
65395 |
T |
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