View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2243_low_3 (Length: 287)
Name: NF2243_low_3
Description: NF2243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2243_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 52108649 - 52108910
Alignment:
| Q |
12 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
111 |
Q |
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| T |
52108649 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
52108748 |
T |
|
| Q |
112 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108749 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
52108848 |
T |
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| Q |
212 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatg |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108849 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatg |
52108910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 44519922 - 44520182
Alignment:
| Q |
12 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||| |||||| |
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| T |
44519922 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcc-aattttttataaataccctaaaatacgaatcatgttttttctcacacta |
44520020 |
T |
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| Q |
112 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520021 |
caacccaaaattaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
44520120 |
T |
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| Q |
212 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatg |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520121 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatg |
44520182 |
T |
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