View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2244_high_5 (Length: 409)

Name: NF2244_high_5
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2244_high_5
NF2244_high_5
[»] chr7 (1 HSPs)
chr7 (1-401)||(47501751-47502166)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 47501751 - 47502166
Alignment:
Q  1 tatatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaaagtacactatgaaataaatatctcagcgggaactaattaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    ||||||    
T  47501751 tatatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaaagtacaatatgaaataaatatctcagcgagaac----taaatt 47501846  T
Q  101 atttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagtgttatatataaaag--------ttta-------tgatctacat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||        ||||       ||||||||||    
T  47501847 atttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagtgttatatatagcaggacacttatttactaatattgatctacat 47501946  T
Q  186 catttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccctagtaaaaagaagaaaatactactaatattggcgtttnnnnnn 285  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||          
T  47501947 aatttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccctagtaaaaagaagaaaatactgctaatattggcgtttaaaaaa 47502046  T
Q  286 nnnnnnnnnnnnngataatatgggtggttatagact----tgtgttattttaaagtttcaaaatcaacaagtacttaaattgattaatttttaaagactg 381  Q
                 ||||||||||||| |||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47502047 atgaaaaagaaaagataatatgggtgcttatagacttgtgtgtgttattttaaagtttcaaaatcaacaagtacttaaattgattaatttttaaagactg 47502146  T
Q  382 actttttgcatgtgatgatg 401  Q
    ||||||||||||||||||||    
T  47502147 actttttgcatgtgatgatg 47502166  T

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