View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2244_high_9 (Length: 379)
Name: NF2244_high_9
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 8893639 - 8893291
Alignment:
| Q |
16 |
gatacatgaagctatgagagctattttcatcctcgtgttttcttaaaaaaccgacccgtttggaagtaccgttttaaatatataaggaaaaacatggtct |
115 |
Q |
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| T |
8893639 |
gatacatgaagctatgagagctattttcatcctcgtgttttcttaaaaaaccgacccgtttggaagtaccgttttaaatatatagggaaaaacatggtct |
8893540 |
T |
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| Q |
116 |
ttccacctcgaatgagtgagttagacaaaaccgtgtttttccatgcagaacaatatttccaaatggaatcgggtttttaagaaaacttgtggagaacaaa |
215 |
Q |
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| T |
8893539 |
ttccacctcgaatgagtgagttagacaaaactgtgtttttccgtgcagaacaatatttccaaatggaatcgggtttttaagaaaacttgtggggaacaaa |
8893440 |
T |
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| Q |
216 |
aagcagtttaaattatagcttcatttgcgtgtaataaagtatattaa--tgtgttagnnnnnnnnnnnnnnnnnnnnnattcacattttaatgattctaa |
313 |
Q |
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| T |
8893439 |
aagcagtttaaattatagcttcatttgcgtgtaataaagtatattaatgtgtgttagttttttttctttttttttc---ttcacattttaatgattctaa |
8893343 |
T |
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| Q |
314 |
aatcagtaggtattcttgcatatgggtgctttttgtgtaacagaaattgtat |
365 |
Q |
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| T |
8893342 |
aatcagtaggtattcttgcatatgggtgctttttgtgtaacagaaattgtat |
8893291 |
T |
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