View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2244_low_12 (Length: 325)
Name: NF2244_low_12
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_low_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 13887349 - 13887025
Alignment:
| Q |
1 |
atcttcaaaagctcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagt |
100 |
Q |
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| T |
13887349 |
atcttcaaaagctcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagt |
13887250 |
T |
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| Q |
101 |
ctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcag |
200 |
Q |
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| T |
13887249 |
ctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcag |
13887150 |
T |
|
| Q |
201 |
ttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887149 |
ttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaag |
13887050 |
T |
|
| Q |
301 |
taaatcagaaactgtgtctttgaag |
325 |
Q |
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| T |
13887049 |
taaatcagaaactgtgtctttgaag |
13887025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 13897871 - 13898179
Alignment:
| Q |
17 |
gcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
116 |
Q |
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| T |
13897871 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
13897970 |
T |
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| Q |
117 |
gaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaa |
216 |
Q |
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| T |
13897971 |
gaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaaa |
13898070 |
T |
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| Q |
217 |
ctttgttgaatgaaactcgatactcgctgttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaagtaaatcagaaactgtg |
316 |
Q |
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| T |
13898071 |
atttgtcgaatgaaactcgatactcgctattttcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagatactatg |
13898170 |
T |
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| Q |
317 |
tctttgaag |
325 |
Q |
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||| ||||| |
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| T |
13898171 |
tctctgaag |
13898179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 324
Target Start/End: Original strand, 1034916 - 1035235
Alignment:
| Q |
5 |
tcaaaagctcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctca |
104 |
Q |
| |
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|||||||||| |||||| || |||||||| |||||| |||| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1034916 |
tcaaaagctcctgcaaagggaatttcaggcaaatgaggttgtaagcaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctca |
1035015 |
T |
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| Q |
105 |
acaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgt |
204 |
Q |
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|||||||||||||||||| |||| ||| ||||||||| ||| | |||||||| ||||||||||||||||||||||||||||| | ||| ||| |||| |
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| T |
1035016 |
gcaaaatatcttgaagatctatggcaacatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgt |
1035115 |
T |
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| Q |
205 |
taatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaagtaaa |
304 |
Q |
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||| || ||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| || || ||| ||||||||||||||| ||||| |
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| T |
1035116 |
taactttctaaaatttgtcgaatgaaactcgatactagctattttcctttgtttctgccatgtttcattgtcagcagtgaaaataccgtctccgagtaat |
1035215 |
T |
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| Q |
305 |
tcagaaactgtgtctttgaa |
324 |
Q |
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||||||||| ||||| |||| |
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| T |
1035216 |
tcagaaactatgtctctgaa |
1035235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 46 - 303
Target Start/End: Original strand, 28667237 - 28667494
Alignment:
| Q |
46 |
caaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaac |
145 |
Q |
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||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| || | ||| ||||||||||| || | || ||| | |||| |
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| T |
28667237 |
caaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatctgtgacagcccttttat-caac |
28667335 |
T |
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| Q |
146 |
-gatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgct |
244 |
Q |
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||| |||||| ||||||| ||||| | |||||||||||||| |||||||||||||| || || ||||| || |||||||||||||| |||||| |
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| T |
28667336 |
tgattcatctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgct |
28667435 |
T |
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| Q |
245 |
gttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaagtaa |
303 |
Q |
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||||| |||||||| |||||| |||| | |||| || ||| ||||| ||||||||||| |
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| T |
28667436 |
gtttttctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaa |
28667494 |
T |
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