View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2244_low_14 (Length: 322)
Name: NF2244_low_14
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 13887414 - 13887720
Alignment:
| Q |
1 |
ttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaactttctttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887414 |
ttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaactttctttgga |
13887513 |
T |
|
| Q |
101 |
acatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887514 |
acatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagg |
13887613 |
T |
|
| Q |
201 |
gatatatgtgtaagttttatattagctgggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13887614 |
gatatatgtgtaagttttatattagctgggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagtggaggaga |
13887713 |
T |
|
| Q |
301 |
aaatatt |
307 |
Q |
| |
|
||||||| |
|
|
| T |
13887714 |
aaatatt |
13887720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 13897790 - 13897490
Alignment:
| Q |
1 |
ttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaactttctttgga |
100 |
Q |
| |
|
|||||||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13897790 |
ttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaactttctttgca |
13897691 |
T |
|
| Q |
101 |
acatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagg |
200 |
Q |
| |
|
| |||| ||| ||||| |||||| ||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
13897690 |
aaatga------agacaataaggaaaaatcggatttgttaactgtgttcatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagg |
13897597 |
T |
|
| Q |
201 |
gatatatgtgtaagttttatattagctgggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggaga |
300 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
13897596 |
gatatttgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggaga |
13897497 |
T |
|
| Q |
301 |
aaatatt |
307 |
Q |
| |
|
||||||| |
|
|
| T |
13897496 |
aaatatt |
13897490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 305
Target Start/End: Complemental strand, 7295789 - 7295523
Alignment:
| Q |
34 |
caatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaactttctttggaacatgatatggaagatgataagcgaaaatcaga |
133 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| || || | |||||||||| ||||||| | |
|
|
| T |
7295789 |
caatacaaaaagctgatgaatttgctgagaatattataagggcaagaaagaaggaactttctttgcaaaatta------agatgataaggaaaaatcaaa |
7295696 |
T |
|
| Q |
134 |
tttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagggatatatgtgtaagttttatattagctgggaga |
233 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||| | || |||||||||| |||||||||||||| | | ||| |||||||| |||||| |
|
|
| T |
7295695 |
tttgttaactgtgttaatgaggcttacggatgagaatggaatttcatactcagataagt--gtgagggatatatgtttgaatttcatattagccgggaga |
7295598 |
T |
|
| Q |
234 |
gacacttcttc---agttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaata |
305 |
Q |
| |
|
||||||||||| ||||||||| || || |||||||||| ||| |||| ||| ||||| | ||||| |||||| |
|
|
| T |
7295597 |
gacacttcttctttagttgctttgaggcggcttttctggttgcttgatcataataatgaaatggaggaaaaaata |
7295523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 1034847 - 1034547
Alignment:
| Q |
1 |
ttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaactttctttgga |
100 |
Q |
| |
|
|||||||||||||||| |||||| | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1034847 |
ttaacttaggtatggaaagaaagcttaagaaatccatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaactttctttgca |
1034748 |
T |
|
| Q |
101 |
acatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagg |
200 |
Q |
| |
|
| |||| ||| |||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
1034747 |
aaatga------agacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagg |
1034654 |
T |
|
| Q |
201 |
gatatatgtgtaagttttatattagctgggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggaga |
300 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1034653 |
gatatttgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttgaggaga |
1034554 |
T |
|
| Q |
301 |
aaatatt |
307 |
Q |
| |
|
||||||| |
|
|
| T |
1034553 |
aaatatt |
1034547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 129 - 307
Target Start/End: Complemental strand, 28667005 - 28666827
Alignment:
| Q |
129 |
tcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagggatatatgtgtaagttttatattagctg |
228 |
Q |
| |
|
||||||||||||||||| ||||||||| | || ||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||||| |
|
|
| T |
28667005 |
tcagatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctg |
28666906 |
T |
|
| Q |
229 |
ggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaatatt |
307 |
Q |
| |
|
|||||||||||||||| || ||||| || |||||||| ||||||||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
28666905 |
ggagagacacttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtggaggagaagatatt |
28666827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University