View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2244_low_17 (Length: 262)
Name: NF2244_low_17
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 47075245 - 47075490
Alignment:
| Q |
1 |
caagaaaaagcaagatgagttttaagaatgtaataaataaaacggatatgatggagcttggtattgaatatttacacttttagataaaatgtctttgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075245 |
caagaaaaagcaagatgagttttaagaatgtaataaataaaacggatatgatggagcttggtattgaatatttacacttttagataaaatgtctttgtta |
47075344 |
T |
|
| Q |
101 |
tccaagtgagaacaacggaagataatctcaacagcactccttgcagcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075345 |
tccaagtgagaacaacggaagataatctcaacagcactccttgcagcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaa |
47075444 |
T |
|
| Q |
201 |
tccctcttttgttttgaagctttacagttaagctccggcttggttt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075445 |
tccctcttttgttttgaagctttacagttaagctccggcttggttt |
47075490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 47057666 - 47057780
Alignment:
| Q |
60 |
ggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgcagcaacagtctcctc |
159 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
47057666 |
ggtattgaatatgtacacttttagaaaaaatgtctttgttatccaagcgagaacaacggaagataatctcaacagcactccttgaagcaacagtctcttc |
47057765 |
T |
|
| Q |
160 |
agcatgaatggtaat |
174 |
Q |
| |
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|||| |||||||||| |
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| T |
47057766 |
agcaagaatggtaat |
47057780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 18230076 - 18229876
Alignment:
| Q |
46 |
atatgatggagcttggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgca |
145 |
Q |
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|||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||| || ||||| |
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| T |
18230076 |
atatgatgaagctaggtattgaatatgtacacttttagaaaaaatgtctttgttatccaagtgagagcagcggaagataatatcaacagcattctttgca |
18229977 |
T |
|
| Q |
146 |
gcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaatccctcttttgttttgaagctttacagttaagctccggcttggtt |
245 |
Q |
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||||| || |||||||| |||||||||||||||||||| ||| |||||| | || |||||| ||||||||||||| ||| |||||||||| |||| ||| |
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| T |
18229976 |
gcaactgtttcctcagcgtgaatggtaattgccccttgatttatttgactaatattccctcctttgttttgaagccttatggttaagctcctgctttgtt |
18229877 |
T |
|
| Q |
246 |
t |
246 |
Q |
| |
|
| |
|
|
| T |
18229876 |
t |
18229876 |
T |
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