View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2244_low_18 (Length: 258)
Name: NF2244_low_18
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 47074948 - 47074685
Alignment:
| Q |
1 |
taatgtcaaattatatagctttttgtttagcctaaacttctttaggctttacactttctag--------------atgcaaaatagtgacatcaatgttt |
86 |
Q |
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| T |
47074948 |
taatgtcaaattatatagctttttgtttagcctaaacttctttaggctttacactttctagttcatactttatagatgcaaaatagtgacatcaatgttt |
47074849 |
T |
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| Q |
87 |
gttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcgatcaacacgcaatggac |
186 |
Q |
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| T |
47074848 |
gttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcgatccacacgcaatggac |
47074749 |
T |
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| Q |
187 |
aagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttgatctctgct |
250 |
Q |
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| T |
47074748 |
aagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttgatctctgct |
47074685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 47056896 - 47056763
Alignment:
| Q |
71 |
agtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcga |
170 |
Q |
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| T |
47056896 |
agtgacatcaaagtttgttgccatcagtaaaatgcagaaaacaatagcagaccttgaaaagctatgcaatgagagaaaaggtgtgaattttgtcatgcca |
47056797 |
T |
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| Q |
171 |
tcaacacgcaatggacaagagaaggtattcattg |
204 |
Q |
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| T |
47056796 |
tccaaacgcaaaggacaagagaaggtgttcattg |
47056763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 18230530 - 18230687
Alignment:
| Q |
59 |
tagatgcaaaatagtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaat |
158 |
Q |
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||||||||||||| ||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
18230530 |
tagatgcaaaatactgacatcaaagtttgttgccgacagtaaactgaaaaaatcagtagcagaccttgaaaagctataccaagaaaaaaaaggcgcaaat |
18230629 |
T |
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| Q |
159 |
tttgtcatgcgatcaacacgcaatggacaagagaaggtattcattggtccctgaaatc |
216 |
Q |
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| T |
18230630 |
tttgtcatgccatccacacgcaatggacaagagaaggtgttcattgatccctgcaatc |
18230687 |
T |
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