View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2244_low_2 (Length: 761)

Name: NF2244_low_2
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2244_low_2
NF2244_low_2
[»] chr8 (20 HSPs)
chr8 (576-743)||(42615527-42615694)
chr8 (363-483)||(43203164-43203283)
chr8 (474-572)||(28291297-28291395)
chr8 (478-587)||(43203300-43203410)
chr8 (353-451)||(24305996-24306096)
chr8 (474-572)||(31844370-31844468)
chr8 (474-564)||(38697878-38697968)
chr8 (364-446)||(39516384-39516466)
chr8 (358-446)||(38131-38219)
chr8 (496-572)||(24306163-24306239)
chr8 (496-572)||(31845832-31845908)
chr8 (358-446)||(42793849-42793936)
chr8 (496-572)||(43202098-43202174)
chr8 (358-446)||(22621017-22621103)
chr8 (392-446)||(7951952-7952007)
chr8 (478-572)||(9854899-9854993)
chr8 (474-533)||(42793740-42793799)
chr8 (496-546)||(17455075-17455125)
chr8 (392-437)||(24068474-24068519)
chr8 (358-451)||(24191522-24191613)
[»] chr5 (18 HSPs)
chr5 (348-572)||(4124758-4125005)
chr5 (88-167)||(4125335-4125414)
chr5 (474-572)||(10735765-10735863)
chr5 (476-572)||(10736956-10737052)
chr5 (474-572)||(41144534-41144632)
chr5 (14-69)||(4125767-4125822)
chr5 (496-572)||(35081475-35081551)
chr5 (496-572)||(4127291-4127367)
chr5 (496-572)||(28702571-28702647)
chr5 (392-446)||(8188115-8188169)
chr5 (392-483)||(9219289-9219380)
chr5 (474-572)||(35047421-35047519)
chr5 (504-562)||(42642056-42642114)
chr5 (394-451)||(10736852-10736909)
chr5 (358-451)||(1103847-1103939)
chr5 (95-154)||(4125118-4125177)
chr5 (477-572)||(13519475-13519569)
chr5 (477-562)||(22308818-22308903)
[»] chr7 (12 HSPs)
chr7 (474-572)||(10955847-10955945)
chr7 (474-572)||(43442779-43442877)
chr7 (358-446)||(17288122-17288211)
chr7 (496-572)||(10957192-10957268)
chr7 (496-572)||(26135643-26135719)
chr7 (496-572)||(26146745-26146821)
chr7 (474-572)||(2414751-2414845)
chr7 (477-572)||(669407-669502)
chr7 (371-446)||(28326285-28326359)
chr7 (402-446)||(41515143-41515187)
chr7 (474-539)||(666761-666826)
chr7 (509-546)||(22039157-22039194)
[»] chr4 (23 HSPs)
chr4 (474-585)||(39056413-39056525)
chr4 (474-572)||(1521210-1521308)
chr4 (477-572)||(36846578-36846673)
chr4 (482-572)||(35348799-35348889)
chr4 (496-572)||(35350146-35350222)
chr4 (358-446)||(3528337-3528427)
chr4 (474-572)||(26631235-26631333)
chr4 (496-572)||(26629793-26629869)
chr4 (358-446)||(46795908-46795995)
chr4 (358-446)||(47667325-47667412)
chr4 (478-585)||(37106270-37106377)
chr4 (496-572)||(1519813-1519889)
chr4 (358-451)||(26631097-26631190)
chr4 (358-446)||(41348386-41348472)
chr4 (477-561)||(26491430-26491514)
chr4 (358-446)||(29665456-29665543)
chr4 (358-446)||(38554076-38554163)
chr4 (496-572)||(39057805-39057881)
chr4 (477-564)||(26425784-26425871)
chr4 (392-451)||(49895186-49895245)
chr4 (358-451)||(44499865-44499955)
chr4 (404-446)||(56001196-56001238)
chr4 (387-448)||(20827431-20827492)
[»] chr3 (9 HSPs)
chr3 (474-572)||(37416454-37416552)
chr3 (358-488)||(10339871-10340000)
chr3 (358-446)||(48253080-48253167)
chr3 (404-483)||(7271518-7271597)
chr3 (474-572)||(37414997-37415095)
chr3 (398-451)||(10301736-10301789)
chr3 (358-446)||(47766833-47766920)
chr3 (369-451)||(54750335-54750417)
chr3 (371-483)||(53809388-53809499)
[»] chr1 (14 HSPs)
chr1 (474-572)||(26287800-26287898)
chr1 (497-572)||(5611728-5611803)
chr1 (474-572)||(48528913-48529011)
chr1 (358-433)||(48528775-48528849)
chr1 (358-446)||(26803099-26803185)
chr1 (474-572)||(26286414-26286512)
chr1 (358-446)||(40110535-40110621)
chr1 (358-446)||(40533482-40533570)
chr1 (392-451)||(6048062-6048121)
chr1 (473-572)||(7304814-7304913)
chr1 (474-572)||(5613101-5613199)
chr1 (474-572)||(7306271-7306369)
chr1 (474-572)||(12665793-12665891)
chr1 (395-451)||(5611880-5611936)
[»] chr2 (11 HSPs)
chr2 (496-572)||(1149226-1149302)
chr2 (496-572)||(1147751-1147827)
chr2 (496-562)||(40556952-40557018)
chr2 (523-572)||(8320784-8320833)
chr2 (478-562)||(25559294-25559378)
chr2 (506-562)||(40559157-40559213)
chr2 (387-446)||(2717688-2717747)
chr2 (477-560)||(17460703-17460786)
chr2 (358-448)||(19397678-19397767)
chr2 (474-572)||(19398816-19398914)
chr2 (496-546)||(25561697-25561747)
[»] scaffold0092 (1 HSPs)
scaffold0092 (479-572)||(39826-39919)
[»] chr6 (10 HSPs)
chr6 (496-572)||(30231480-30231556)
chr6 (392-451)||(18242222-18242281)
chr6 (496-572)||(30232944-30233020)
chr6 (496-572)||(136629-136705)
chr6 (496-572)||(138244-138320)
chr6 (496-572)||(146265-146341)
chr6 (493-572)||(11967250-11967329)
chr6 (482-572)||(11968501-11968591)
chr6 (376-436)||(13279513-13279573)
chr6 (499-572)||(35037135-35037208)
[»] scaffold0219 (2 HSPs)
scaffold0219 (474-572)||(8206-8304)
scaffold0219 (364-448)||(7042-7124)
[»] scaffold0077 (1 HSPs)
scaffold0077 (477-560)||(52606-52689)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 7e-85; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 576 - 743
Target Start/End: Original strand, 42615527 - 42615694
Alignment:
Q  576 ttaataatataagaaaagagatattttactttgacaaatgaaatgagtgattaagacttgttcatttaagttaatctggttgattaaattgaaaaagtga 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42615527 ttaataatataagaaaagagatattttactttgacaaatgaaatgagtgattaagacttgttcatttaagttaatctggttgattaaattgaaaaagtga 42615626  T
Q  676 catacagcttaaactattatatatagctttctttatattcagacacaagacagattccttgcaaaaaa 743  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42615627 cgcacagcttaaactattatatatagctttctttatattcagacacaagacagattccttgcaaaaaa 42615694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 483
Target Start/End: Original strand, 43203164 - 43203283
Alignment:
Q  363 gagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaatnnnnnnnttta 462  Q
    ||||| |||||||||| ||||||  ||| ||||| |||| ||||||| ||||||||||||||||| |||||||||  ||||||||||||       ||||    
T  43203164 gagaagatgatgaaaagtgaaaaa-aattaggtgctgatagttcacttttaaatacaatggacatgcaatcaaatgtttaaaattaaatcaaaaaattta 43203262  T
Q  463 aacattaaacaactaacggag 483  Q
     |||||||| |||||||||||    
T  43203263 gacattaaaaaactaacggag 43203283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 28291395 - 28291297
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||| ||||||||||||| |||| ||| ||||||||||  |||||||||| ||||||||||||    ||| |||||| ||||||||| ||||||||    
T  28291395 actaacgaagcaaaataagagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaatta 28291297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 478 - 587
Target Start/End: Original strand, 43203300 - 43203410
Alignment:
Q  478 acggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatt-agcct 576  Q
    ||||||||||||||||| |||  ||| ||||||||||  | |||||||| ||||||||||| || |||| | |||  ||||||||||||||||| |||||    
T  43203300 acggagcaaaataagagggacggaaatgttgattttacgagttatgggaccaaaatgaaaataacaaattatttaatggaccaaaagtccaattaagcct 43203399  T
Q  577 taataatataa 587  Q
    |||| ||||||    
T  43203400 taattatataa 43203410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 24305996 - 24306096
Alignment:
Q  353 gagatgaagggagaacatgatgaaaaatgaaaattaa--tcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaa 450  Q
    |||| |||| ||||| |||||||||||| |||| |||  ||| ||||||| | ||||||||||||||||||||| || |||| |||| ||||||||||||    
T  24305996 gagaagaagagagaagatgatgaaaaataaaaaataaaatcatgtgttgacgattcactattaaatacaatggagatccaattaaatggttaaaattaaa 24306095  T
Q  451 t 451  Q
    |    
T  24306096 t 24306096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 31844468 - 31844370
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||| ||||| |||||||| ||| ||||||  | ||| ||||  ||||||||||||| |||| ||||   ||||||||||||||||||    
T  31844468 actaacggagcaaaacaagagggaccaaaatgttaattttacgagttacgggactaaaatgaaaacaacaaattactttagggaccaaaagtccaatta 31844370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 38697968 - 38697878
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaag 564  Q
    ||||||||||||||| ||||| |||||||| |||||||||| || |||||| | ||||||| ||| |  |||| |||||| ||||||||||    
T  38697968 actaacggagcaaaacaagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaatagaaaattacttaggggaccaaaag 38697878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 364 - 446
Target Start/End: Original strand, 39516384 - 39516466
Alignment:
Q  364 agaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| |||||||||||||||||   || || || ||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  39516384 agaagatgatgaaaaatgaaaaaagattagatgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaat 39516466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 38219 - 38131
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| || |||  ||| ||||| ||| |||||||| ||||||||||||||||| |||| |||| ||||||||    
T  38219 gaagagagaagatgatgaaaagtggaaaaaaattaggtgctgacggttcactgttaaatacaatggacatgcaattaaatggttaaaat 38131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 24306163 - 24306239
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||  |||||||||  | |||||||| ||||||||||||||||||| |||||| | ||||||||||| ||||    
T  24306163 gaccaaaatattgattttacgagttatgggaccaaaatgaaaacaagaaattacttagggaaccaaaagtcctatta 24306239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 31845832 - 31845908
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||| ||||||||||| | |||||||| |||||||||||||| || | |||||  ||||||||| ||||||||    
T  31845832 gaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttacttaagggaccaaaactccaatta 31845908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 42793936 - 42793849
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| ||||||||||  |||||  ||| |||||| |||||||||||||||| |||||||||||| ||||| ||| ||||||||    
T  42793936 gaagagagaagatgatgaaaagcgaaaaa-aattaggtgtcgatggttcactattaattacaatggacatgcaatccaatggttaaaat 42793849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 43202174 - 43202098
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||| ||||||||||  | ||||||||  ||||||||||||| |||| |||||| ||| ||||||||||||||    
T  43202174 gaccaaaatgttgattttacgagttatgggactaaaatgaaaacaacaaattacttaggggatcaaaagtccaatta 43202098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 22621017 - 22621103
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| ||||||  ||| ||||| ||| |||||||  ||||||||||||||||| |||||||||  |||||||    
T  22621017 gaagagagaagatgatgaaaagtgaaaa--aattaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatgattaaaat 22621103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 7951952 - 7952007
Alignment:
Q  392 aggtgttgatgg-ttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||||||||||| |||||||| ||||||||||||| |  |||||||||||||||||    
T  7951952 aggtgttgatgggttcactatcaaatacaatggacttgtaatcaaatagttaaaat 7952007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 572
Target Start/End: Original strand, 9854899 - 9854993
Alignment:
Q  478 acggagcaaaat-aagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||| ||||| |||||||| || ||||||| || |||||||| ||||||| |||||   ||| | ||||||||||||| |||||||||    
T  9854899 acggagcaaaatcaagag-gaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaatta 9854993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 42793799 - 42793740
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaat 533  Q
    ||||||||||||||| ||||| |||||||| ||| |||||| || |||||||| ||||||    
T  42793799 actaacggagcaaaacaagagggaccaaaatgttaattttacaatttatgggaccaaaat 42793740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 17455125 - 17455075
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaat 546  Q
    |||||||| |||||||||| |||||||| || |||||||||||||| ||||    
T  17455125 gaccaaaaagttgattttacaaattatgtgaccaaaatgaaaacaaaaaat 17455075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 24068519 - 24068474
Alignment:
Q  392 aggtgttgatggttcactattaaatacaatggacatacaatcaaat 437  Q
    ||||| ||| |||||||||||| ||||||||||||| |||||||||    
T  24068519 aggtgctgacggttcactattagatacaatggacatgcaatcaaat 24068474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 451
Target Start/End: Complemental strand, 24191613 - 24191522
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    |||| ||||| |||||||||||| ||||  ||| ||||| ||| |||||||||| | ||||||||||||| ||||||||  |||||||| ||||    
T  24191613 gaagagagaagatgatgaaaaataaaaaa-aattaggtgctgacggttcactat-agatacaatggacatgcaatcaaacggttaaaatcaaat 24191522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 5e-49; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 348 - 572
Target Start/End: Complemental strand, 4125005 - 4124758
Alignment:
Q  348 tattggagatgaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaatt 447  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  4125005 tattggagatgaagggagaagatgatgaaaaatgaaaattaatcaggtgctgacggttcactattaaatacaatggatatacaatcaaatggttaaaatt 4124906  T
Q  448 aaatnnnnnnntttaaacattaaac----------------------aactaacggagcaaaataagagagaccaaaacgttgattttataaattatggg 525  Q
    ||||       ||||||||||||||                      |||||||||||||||| || || |||||||||||||||||||| ||||||||     
T  4124905 aaatcaaaatttttaaacattaaacaactaatgaaggggaccaaattaactaacggagcaaaacaaaagggaccaaaacgttgattttatgaattatgga 4124806  T
Q  526 atcaaaatgaaaacaagaaa-tgacttagaggaccaaaagtccaatta 572  Q
    | |||||||||||||||||| | |||||||||||||||||||||||||    
T  4124805 accaaaatgaaaacaagaaatttacttagaggaccaaaagtccaatta 4124758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 4125414 - 4125335
Alignment:
Q  88 ctgtgtagttgttgtgaaaatgaagtgggaagagaagagagaaggagggaacaaaatagagaatgggtagttaaatggat 167  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4125414 ctgtgtagttgtcgtgaaaatgaagtgggaagagaagagagaaggagggaacaatatagagaatgggtagttaaatggat 4125335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 10735863 - 10735765
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||| ||||| |||||||||||||||||||  | |||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||    
T  10735863 actaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaagtaattacttaggggaccaaaagtccaatta 10735765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 476 - 572
Target Start/End: Original strand, 10736956 - 10737052
Alignment:
Q  476 taacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||| ||||| |||||||| ||||||||||  | |||||||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  10736956 taacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaagaaattacttaggggaccaaaagtccaatta 10737052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 41144534 - 41144632
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||||||| | || ||||||||||||||||||| || |||||||| |||||||||||||| |||| | |||| ||||||||| ||||||||    
T  41144534 actaacggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaacaacaaattaattaggggaccaaaaatccaatta 41144632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 4125822 - 4125767
Alignment:
Q  14 cataggaaataaagggagattaatgggtaagctttaatttttgaggtttttggagg 69  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4125822 cataggaaataaagggagattaatgggtaagttttaatttttgaggtttttggagg 4125767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 35081475 - 35081551
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||||||||||  | |||||||| ||||||||||||||  ||| |||||| ||||||||||||||||||    
T  35081475 gaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaaacaattacttaggggaccaaaagtccaatta 35081551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 4127291 - 4127367
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||| ||||||  | |||||||| |||||||||||||| |||| ||||||||||||||  |||||||||    
T  4127291 gaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttagaggaccaagggtccaatta 4127367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 28702647 - 28702571
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||| ||||||  | |||||||| |||||||||||||| |||| |||||| |||| |||||||||||||    
T  28702647 gaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggacaaaaagtccaatta 28702571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 8188115 - 8188169
Alignment:
Q  392 aggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||    
T  8188115 aggtgttgatggttcaccattaaatataatggacatgcaatcaaatggttaaaat 8188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 483
Target Start/End: Complemental strand, 9219380 - 9219289
Alignment:
Q  392 aggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaatnnnnnnntttaaacattaaacaactaacggag 483  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||  |||||||| ||||       |||| |||||||| |||||||||||    
T  9219380 aggtgttgaaggttcactattaaatacaatgaacatgcaatcaaacggttaaaatcaaataaaaaattttagacattaaaaaactaacggag 9219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 35047519 - 35047421
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||| || || |||   |||||||||||||  | |||||||| ||||||||||||| ||||| |||||| ||| ||||| ||||||||    
T  35047519 actaacggagcaaaacaaaagggacttgaacgttgattttacgagttatgggaccaaaatgaaaacacgaaataacttaggggatcaaaaatccaatta 35047421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 562
Target Start/End: Original strand, 42642056 - 42642114
Alignment:
Q  504 cgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaa 562  Q
    ||||||||||| || ||||||||||||||||||||||| |||| | |||||||||||||    
T  42642056 cgttgattttagaacttatgggatcaaaatgaaaacaataaattagttagaggaccaaa 42642114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 10736852 - 10736909
Alignment:
Q  394 gtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||| ||||    
T  10736852 gtgttgacggttcactattagatacaatggacattcaatcaaatggttaaaatcaaat 10736909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 451
Target Start/End: Original strand, 1103847 - 1103939
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    |||| ||||| |||||||||| | ||||| ||| ||||||||| |||| ||||||||||||||||| |||  |||| ||| |||||||| ||||    
T  1103847 gaagagagaagatgatgaaaagtaaaaat-aattaggtgttgacggttaactattaaatacaatgggcatgtaatctaatggttaaaatcaaat 1103939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 4125177 - 4125118
Alignment:
Q  95 gttgttgtgaaaatgaagtgggaagagaagagagaaggagggaacaaaatagagaatggg 154  Q
    ||||| ||||||||||||  ||||||||||||||||| | ||||||||| |||| |||||    
T  4125177 gttgtcgtgaaaatgaaggaggaagagaagagagaagaatggaacaaaagagaggatggg 4125118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 572
Target Start/End: Complemental strand, 13519569 - 13519475
Alignment:
Q  477 aacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||| ||||  |||||||| |||||||||   | ||||||||  |||||| ||||||||||| | |||| ||| ||||||||||||||    
T  13519569 aacggagcaaaacaagaaggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattagttag-ggaacaaaagtccaatta 13519475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 562
Target Start/End: Original strand, 22308818 - 22308903
Alignment:
Q  477 aacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaa 562  Q
    |||||||||||||  ||| ||| ||||||    |||||| |||||||||| ||||||||||||| ||||| | |||| ||||||||    
T  22308818 aacggagcaaaatgtgagggactaaaacgcctgttttattaattatgggaccaaaatgaaaacatgaaattatttaggggaccaaa 22308903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 10955945 - 10955847
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||| |||||| |||||||||||||||| |||| |||||  ||||||||||||||||||    
T  10955945 actaacggagcaaaacaagagggactaaaacgttgattttataagttatggaatcaaaatgaaaacaacaaattacttaagggaccaaaagtccaatta 10955847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 43442779 - 43442877
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||| ||||| |||||||| ||||||||||  | |||||||| ||| |||||||||| |||| |||||| ||||||||||| ||||||    
T  43442779 actaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaatatgaaaacaacaaattacttaggggaccaaaagttcaatta 43442877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 17288122 - 17288211
Alignment:
Q  358 gaagggagaacatgatgaaaaatg-aaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| || ||||  ||| ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  17288122 gaagagagaagatgatgaaaagtggaaaaaaaattaggtgctgacggttcactattaaatacaatggacatgcaatcaaatagttaaaat 17288211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 10957192 - 10957268
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||| ||||||  | |||||||| |||||||||||||| |||| |||||| ||||||||||||||||||    
T  10957192 gaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggaccaaaagtccaatta 10957268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 26135719 - 26135643
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||||||| || |||||||| |||||||||||||  |||| | |||| ||||||||||||||||||    
T  26135719 gaccaaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtccaatta 26135643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 26146745 - 26146821
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||| |||| ||||||||| || |||| |||||||||||||||||| |||| | |||| ||||||||||||||||||    
T  26146745 gaccgaaacattgattttaaaatttataggatcaaaatgaaaacaacaaattagttaggggaccaaaagtccaatta 26146821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 2414845 - 2414751
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||||||  | || ||||||||||||| ||||| ||    ||||| ||||||||||||||||||| ||||   ||||||||||||||||||    
T  2414845 actaacggagcaaaaccaaagggaccaaaacgttggttttagaa----tgggagcaaaatgaaaacaagaaattacttgagggaccaaaagtccaatta 2414751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 477 - 572
Target Start/End: Original strand, 669407 - 669502
Alignment:
Q  477 aacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||| |||||||||| || |||| ||| ||||||||||  |||||||||| ||||||||||||    ||| |||||| ||||||||| ||||||||    
T  669407 aacgaagcaaaataaaagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaatta 669502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 28326285 - 28326359
Alignment:
Q  371 gatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||||||||||||||  ||| |||||  || |||||||||||||||| ||||||||| ||||||||| ||||||||    
T  28326285 gatgaaaaatgaaaaa-aattaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaat 28326359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 41515187 - 41515143
Alignment:
Q  402 ggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||||    
T  41515187 ggttcactattaaatataatggacatgcaatcaaatggttaaaat 41515143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 666826 - 666761
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaac 539  Q
    ||||||||||||||| ||||| |||| |||  || ||||||| | ||||| |||||||||||||||    
T  666826 actaacggagcaaaacaagagggaccgaaatattaattttatgagttatgagatcaaaatgaaaac 666761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 22039194 - 22039157
Alignment:
Q  509 attttataaattatgggatcaaaatgaaaacaagaaat 546  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  22039194 attttttaaattatgggaccaaaatgaaaacaagaaat 22039157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 9e-26; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 474 - 585
Target Start/End: Complemental strand, 39056525 - 39056413
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatt-a 572  Q
    ||||||||||||||| ||||| ||| ||||||||||||||| |||||||| || |||||||||||||| |||| |||||  ||||||||||||||||| |    
T  39056525 actaacggagcaaaacaagagggactaaaacgttgattttacaaattatgagaccaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaa 39056426  T
Q  573 gccttaataatat 585  Q
    ||| |||||||||    
T  39056425 gccataataatat 39056413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 1521210 - 1521308
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||| ||||   ||| |||||||| ||||||||||  ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||    
T  1521210 actaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggatcaaaatgaaaacaacaaattagttagaggaccaaaagtccaatta 1521308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 477 - 572
Target Start/End: Original strand, 36846578 - 36846673
Alignment:
Q  477 aacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||| ||||| |||||||| ||||||||||  | |||||||| |||||||||||||| |||| |||||| || |||||||||||||||    
T  36846578 aacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttagggggccaaaagtccaatta 36846673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 482 - 572
Target Start/End: Complemental strand, 35348889 - 35348799
Alignment:
Q  482 agcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||| ||||| ||| ||||||||||||||| || |||||||| |||||||||||||| |||| |||||  ||||||||||||||||||    
T  35348889 agcaaaacaagagggactaaaacgttgattttacaagttatgggaccaaaatgaaaacaacaaattacttaagggaccaaaagtccaatta 35348799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 35350146 - 35350222
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||| ||||||  | ||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  35350146 gaccaaaacgttaattttacgagttatgagatcaaaatgaaaacaacaaattacttaggggaccaaaagtccaatta 35350222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 3528427 - 3528337
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaa--tcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| |||||| |||  | ||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  3528427 gaagagagaagatgatgaaaagtgaaaaataaaattaggtgttgacggttcactattagatacaatggacatgcaatcaaatggttaaaat 3528337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 26631235 - 26631333
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||| |||||  ||||||| ||||||||||  | ||||| || ||||||||||| || |||| |||| | ||||||||||||||||||    
T  26631235 actaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttgggggaccaaaagtccaatta 26631333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 26629869 - 26629793
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||| ||||||||||| | |||||||| |||||||||||||| || | |||||  ||||||||||||||||||    
T  26629869 gaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttacttaagggaccaaaagtccaatta 26629793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 46795908 - 46795995
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| ||||||  ||| |||||  || |||||||||||||||||||||||||| ||||||||| ||||||||    
T  46795908 gaagagagaagatgatgaaaagtgaaaaa-aattaggtgccgacggttcactattaaatacaatggacatgcaatcaaatggttaaaat 46795995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 47667412 - 47667325
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| ||||||  ||| ||||| ||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  47667412 gaagagagaagatgatgaaaagtgaaaaa-aattaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaat 47667325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 478 - 585
Target Start/End: Original strand, 37106270 - 37106377
Alignment:
Q  478 acggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaattagcctt 577  Q
    |||||||||||  | || ||||||| ||||||||||| || |||||||| |||||| ||||||| |||| | |||| ||||||||  || ||||||||||    
T  37106270 acggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaattagttaggggaccaaatatcgaattagcctt 37106369  T
Q  578 aataatat 585  Q
     |||||||    
T  37106370 tataatat 37106377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 1519889 - 1519813
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||| | ||||||||||  |||||||||| |||||||||||| | |||| | |||| ||||||||||||||||||    
T  1519889 gaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagtccaatta 1519813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 451
Target Start/End: Original strand, 26631097 - 26631190
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    |||| ||||| ||||| |||| ||||||  ||| ||||| ||||| |||||| ||||||||||| ||||| ||||||| | |||||||| ||||    
T  26631097 gaagagagaagatgattaaaagtgaaaaaaaattaggtgctgatgattcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaat 26631190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 41348472 - 41348386
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| ||||||  ||| ||||| ||| |||||||  ||||||||||||||||| |||||||||  |||||||    
T  41348472 gaagagagaagatgatgaaaagtgaaaa--aattaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatgattaaaat 41348386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 561
Target Start/End: Complemental strand, 26491514 - 26491430
Alignment:
Q  477 aacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaa 561  Q
    |||||||||||||||||| |||||||| ||||||||||  | ||||| || ||||||  ||||   |||| ||||||||||||||    
T  26491514 aacggagcaaaataagagggaccaaaatgttgattttacgagttatgagaccaaaatataaactgaaaattacttagaggaccaa 26491430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 29665456 - 29665543
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||| ||||| ||||||  ||| |||| |||| ||||||| |||| ||||||||||||| ||||||||| ||||||||    
T  29665456 gaagagagaagatgaagaaaagtgaaaaa-aattaggtattgacggttcacaattagatacaatggacatgcaatcaaatggttaaaat 29665543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 38554163 - 38554076
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| ||||||  ||| | ||| ||| |||||||||||||||||||||||| | | ||||||| ||||||||    
T  38554163 gaagagagaagatgatgaaaagtgaaaaa-aattaagtgatgacggttcactattaaatacaatggacgtgcgatcaaatggttaaaat 38554076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 39057805 - 39057881
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||| ||||||  | |||| |||  ||||| ||||||| |||| |||||| ||||||||||||||||||    
T  39057805 gaccaaaacgttaattttacgagttataggacaaaaataaaaacaacaaattacttaggggaccaaaagtccaatta 39057881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 564
Target Start/End: Original strand, 26425784 - 26425871
Alignment:
Q  477 aacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaag 564  Q
    |||||||||||| ||||||||||||||  |||||||||  | |||| | | ||||||||||||   |||| |||||| ||||||||||    
T  26425784 aacggagcaaaacaagagagaccaaaatattgattttacgagttattgtaccaaaatgaaaactgaaaattacttaggggaccaaaag 26425871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 49895245 - 49895186
Alignment:
Q  392 aggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    |||||||||||||||||||||| |||||| |||| | ||||||||| |||| ||| ||||    
T  49895245 aggtgttgatggttcactattagatacaacggacctgcaatcaaatggttagaatcaaat 49895186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 451
Target Start/End: Original strand, 44499865 - 44499955
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    |||| ||||| |||||||||||| ||||  ||| ||||| ||| |||||||||| | ||||||||||||| ||||||||  |||||||| ||||    
T  44499865 gaagagagaagatgatgaaaaataaaaa--aattaggtgctgacggttcactat-agatacaatggacatgcaatcaaacggttaaaatcaaat 44499955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 56001196 - 56001238
Alignment:
Q  404 ttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||    
T  56001196 ttcactattagatacaatggacatgcaatcaaatggttaaaat 56001238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 448
Target Start/End: Original strand, 20827431 - 20827492
Alignment:
Q  387 taatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaatta 448  Q
    |||| |||||||||||||||||||||  ||| |||| || | ||||||||| ||||||||||    
T  20827431 taattaggtgttgatggttcactattggatataatgaacttgcaatcaaatggttaaaatta 20827492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 37416454 - 37416552
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||| ||||| |||||||| ||||||||||| | |||||| | |||||||||||||| |||| |||||| |||||||||| |||||||    
T  37416454 actaacggagcaaaacaagagggaccaaaatgttgattttatgagttatggaaccaaaatgaaaacaacaaattacttaggggaccaaaaggccaatta 37416552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 358 - 488
Target Start/End: Original strand, 10339871 - 10340000
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaatnnnnnn 457  Q
    |||| ||||| |||||||||| ||||||  ||| | ||| ||| |||||||| ||||||||||||||||| ||||||||| ||| |||| ||||          
T  10339871 gaagagagaagatgatgaaaagtgaaaaa-aattatgtgctgacggttcactgttaaatacaatggacattcaatcaaatggttcaaatcaaatcaaaaa 10339969  T
Q  458 ntttaaacattaaacaactaacggagcaaaa 488  Q
     |||| |||||||| ||||||||||||||||    
T  10339970 atttagacattaaaaaactaacggagcaaaa 10340000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 48253167 - 48253080
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||| ||||||||||||  ||| |||||||||  ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  48253167 gaagagagaagatgaagaaaaatgaaaaa-aattaggtgttgacagttcactattagatacaatggacatgcaatcaaatggttaaaat 48253080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 483
Target Start/End: Original strand, 7271518 - 7271597
Alignment:
Q  404 ttcactattaaatacaatggacatacaatcaaatagttaaaattaaatnnnnnnntttaaacattaaacaactaacggag 483  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||       |||| |||||||| |||||||||||    
T  7271518 ttcactataaaatacaatggacatgcaatcaaatggttaaaattaaatcaaaaagtttagacattaaaaaactaacggag 7271597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 37415095 - 37414997
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||| |||||  ||||||| ||||||||||  | ||||| || ||||||||||| || |||| |||||  |||||||||||| |||||    
T  37415095 actaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttaagggaccaaaagtctaatta 37414997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 10301736 - 10301789
Alignment:
Q  398 tgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||||||| ||||    
T  10301736 tgatggttcactgttaaatacaatggacattcaatcaaatggttaaaatcaaat 10301789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 47766833 - 47766920
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| ||||| |||| ||||||  ||| ||||| ||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  47766833 gaagagagaagatgatcaaaagtgaaaaa-aattaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaat 47766920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 451
Target Start/End: Original strand, 54750335 - 54750417
Alignment:
Q  369 atgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    |||||||||| || |||  ||| || |||||| |||||||| | ||||||| ||||||||||||||||| |||||||| ||||    
T  54750335 atgatgaaaagtggaaaaaaattagatgttgacggttcactgtaaaatacattggacatacaatcaaatggttaaaatcaaat 54750417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 483
Target Start/End: Original strand, 53809388 - 53809499
Alignment:
Q  371 gatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaatnnnnnnntttaaacattaa 470  Q
    |||||||| ||||||  ||| ||||| ||| | |||||| ||||||||||| ||||| ||||||||| |||||||||| ||       |||| |||||||    
T  53809388 gatgaaaagtgaaaaa-aattaggtgctgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaattatatcaaaaaatttagacattaa 53809486  T
Q  471 acaactaacggag 483  Q
    | |||||||||||    
T  53809487 aaaactaacggag 53809499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 26287800 - 26287898
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||| ||||   ||| |||||||| ||||||||||  |||||||||| |||||||||||||| |||| | |||||||||||||||||||||||    
T  26287800 actaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggaccaaaatgaaaacaacaaattagttagaggaccaaaagtccaatta 26287898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 497 - 572
Target Start/End: Complemental strand, 5611803 - 5611728
Alignment:
Q  497 accaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| |||| | ||| |||||||||||||||||||    
T  5611803 accaaaatgttgattttacaaattatgggaccaaaatgaaaacaacaaattagttaaaggaccaaaagtccaatta 5611728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 48528913 - 48529011
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||| |||||||||| ||| |||| ||||||||||  | |||||||| ||||||| |||||| |||| |||| | ||||||||||||||||||    
T  48528913 actaacggagaaaaataagagggactaaaatgttgattttacgagttatgggaccaaaatgtaaacaacaaattacttgggggaccaaaagtccaatta 48529011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 358 - 433
Target Start/End: Original strand, 48528775 - 48528849
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatc 433  Q
    |||| ||||| |||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||||||| |||||    
T  48528775 gaagagagaagatgatgaaaagtgaaaat-aattaggtgttgacggttcactattaaatacaatggacatgcaatc 48528849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 26803099 - 26803185
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| ||||||  ||| ||||| ||| |||||||| ||||||||||||||||| ||||||||| ||||||||    
T  26803099 gaagagagaagatgatgaaaagtgaaaa--aattaggtggtgaaggttcactgttaaatacaatggacatgcaatcaaatggttaaaat 26803185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 26286512 - 26286414
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||    ||| |||||| | ||||||||||  |||||||||| |||||||||||| | |||| | |||| ||||||||||||||||||    
T  26286512 actaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagtccaatta 26286414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 40110535 - 40110621
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| |||||||||| ||||||  ||| ||||| ||| |||||||  ||||||||||||||||| ||||||||| ||||||||    
T  40110535 gaagagagaagatgatgaaaagtgaaaa--aattaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatggttaaaat 40110621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 40533482 - 40533570
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||| ||||| ||||||||||  |||||| ||| |||||  || ||||||||||||| |||||||||||| ||||| ||| ||||||||    
T  40533482 gaagagagaagatgatgaaaagcgaaaataaattaggtgccgacggttcactattaattacaatggacatgcaatccaatggttaaaat 40533570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 6048121 - 6048062
Alignment:
Q  392 aggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||| |||| ||| ||||    
T  6048121 aggtgttgatggttcactattagatacaatggacctccaatcaaatggttagaatcaaat 6048062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 473 - 572
Target Start/End: Complemental strand, 7304913 - 7304814
Alignment:
Q  473 aactaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||| | ||||||||||||| ||||||||  |||||||||  | ||||||||||| ||||||||||| |||| | || | | ||||| ||||||||||    
T  7304913 aactaatgaagcaaaataagagggaccaaaatattgattttacgagttatgggatcacaatgaaaacaacaaattatttcgggaaccaagagtccaatta 7304814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 5613101 - 5613199
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||    ||| |||||| | ||||||||||  |||||||||| |||||||||||| | |||| | |||| ||| ||||||||||||||    
T  5613101 actaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggatcaaaagtccaatta 5613199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 7306271 - 7306369
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||| ||| |||| ||||| |||||||| ||| ||||||  | |||| ||| |||||||||||||| |||| |||||  | ||||||||||||||||    
T  7306271 actaacagaggaaaacaagagggaccaaaatgttaattttacgagttataggaccaaaatgaaaacaacaaattacttaaggaaccaaaagtccaatta 7306369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 12665891 - 12665793
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||| ||||||||||||| |||| ||| ||||||||||  |||||||||| |||||| |||||    ||| |||||| ||||||||| || |||||    
T  12665891 actaacgaagcaaaataagagggaccgaaatgttgattttacgaattatgggaccaaaataaaaactgataattacttaggggaccaaaaatcaaatta 12665793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 5611936 - 5611880
Alignment:
Q  395 tgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    |||||| |||||||| | ||||||| ||||||||||||||||| |||||||| ||||    
T  5611936 tgttgacggttcactgtaaaatacattggacatacaatcaaatggttaaaatcaaat 5611880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 1149226 - 1149302
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||||||| || |||||||| |||||||||||||| |||| | |||| ||||||||||||||||||    
T  1149226 gaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaggggaccaaaagtccaatta 1149302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 1147827 - 1147751
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||| |||||||||||||| || ||||||||  ||||||||||||| |||| | |||| ||||||||||||||||||    
T  1147827 gaccgaaacgttgattttagaagttatgggactaaaatgaaaacaacaaattagttaggggaccaaaagtccaatta 1147751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 40557018 - 40556952
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaa 562  Q
    ||||||| ||||||||||| || ||||| || |||||||||||||| |||| | |||||||||||||    
T  40557018 gaccaaatcgttgattttagaacttatgagaccaaaatgaaaacaacaaattaattagaggaccaaa 40556952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 572
Target Start/End: Complemental strand, 8320833 - 8320784
Alignment:
Q  523 gggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||| ||||||| ||||||||||| |||||| ||||||||||||||||||    
T  8320833 gggaccaaaatgtaaacaagaaattacttaggggaccaaaagtccaatta 8320784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 562
Target Start/End: Complemental strand, 25559378 - 25559294
Alignment:
Q  478 acggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaa 562  Q
    |||||||||||  | || ||||||| ||||||||||| || |||||||| |||||| ||||||| |||| | |||| ||||||||    
T  25559378 acggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaattagttaggggaccaaa 25559294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 40559157 - 40559213
Alignment:
Q  506 ttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaa 562  Q
    ||||||||| || |||||||| |||||||||||||| |||| | |||||||||||||    
T  40559157 ttgattttagaacttatgggaccaaaatgaaaacaacaaattagttagaggaccaaa 40559213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 2717688 - 2717747
Alignment:
Q  387 taatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaat 446  Q
    |||||||||||||||||||||| |||  ||| ||||||| | ||||||||| ||||||||    
T  2717688 taatcaggtgttgatggttcaccatttgatataatggacgtgcaatcaaatggttaaaat 2717747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 560
Target Start/End: Original strand, 17460703 - 17460786
Alignment:
Q  477 aacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggacca 560  Q
    ||||||| |||||  ||| |||||||||||   |||||| |||| ||||||||||||||||||  ||||| | |||||||||||    
T  17460703 aacggaggaaaatttgagggaccaaaacgtacgttttattaattgtgggatcaaaatgaaaacttgaaattaattagaggacca 17460786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 448
Target Start/End: Complemental strand, 19397767 - 19397678
Alignment:
Q  358 gaagggagaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaatta 448  Q
    |||| ||||| ||||||||||  |||||  ||| |||||| ||  |||||||||||| |||||||||||| ||||| ||| ||||||||||    
T  19397767 gaagagagaagatgatgaaaagcgaaaaa-aattaggtgtcgacagttcactattaattacaatggacatgcaatccaatggttaaaatta 19397678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 19398816 - 19398914
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||| ||||| |||||||| || | ||||| || |||||||| ||||||| ||||  | ||| | |||| | |||||||| |||||||    
T  19398816 actaacggagcaaaacaagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaaccggtaattatttagggaaccaaaagaccaatta 19398914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 25561697 - 25561747
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaat 546  Q
    ||||||| ||||||||||| || |||||||| |||||||||||||| ||||    
T  25561697 gaccaaatcgttgattttagaatttatgggaccaaaatgaaaacaacaaat 25561747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 479 - 572
Target Start/End: Complemental strand, 39919 - 39826
Alignment:
Q  479 cggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||| | |||||||   ||||||||||||| || |||||||| ||||||||||| || |||| |||||| ||||||||||||||||||    
T  39919 cggagcaaaacaggagagactggaacgttgattttacaagttatgggaccaaaatgaaaataataaattacttaggggaccaaaagtccaatta 39826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 30231556 - 30231480
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||||||| || |||||||| |||||||||||||| |||| | |||  ||||||||||||||||||    
T  30231556 gaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaagggaccaaaagtccaatta 30231480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 18242222 - 18242281
Alignment:
Q  392 aggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaattaaat 451  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  18242222 aggtgatgatggttcactataaaatacaatggacatgcaatcaaatggttaaaattaaat 18242281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 30232944 - 30233020
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||| |||||||||||||| || |||||||| |||||||||||||| |||  | |||| ||||||||||||||||||    
T  30232944 gaccgaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaactagttaggggaccaaaagtccaatta 30233020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 136705 - 136629
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||||||| || ||||||||  ||||| ||||||| |||| | |||| |||| |||||||||||||    
T  136705 gaccaaaacgttgattttaaaagttatgggactaaaataaaaacaacaaattagttaggggacgaaaagtccaatta 136629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 138244 - 138320
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||| |||||||||||||| || |||||||| |||||||||||||  |||| | |||| |||||||||||| |||||    
T  138244 gaccgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtcaaatta 138320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 146265 - 146341
Alignment:
Q  496 gaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||| |||||||||||||| || |||||||| |||||||||||||  |||| | |||| |||||||||||| |||||    
T  146265 gaccgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtcaaatta 146341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 493 - 572
Target Start/End: Complemental strand, 11967329 - 11967250
Alignment:
Q  493 agagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||||| |||||||||| | |||||  | |||||||||||||| |||| | |||| ||||||||||| ||||||    
T  11967329 agagaccaaaacattgattttatgagttatgaaaccaaaatgaaaacaacaaattaattaggggaccaaaagtacaatta 11967250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 572
Target Start/End: Original strand, 11968501 - 11968591
Alignment:
Q  482 agcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||| || || |||||||||||| |||||| |  ||||| || |||||||||||||| |||| | |||| ||||||||| ||||||||    
T  11968501 agcaaaacaaaagggaccaaaacgttaattttacaggttatgagaccaaaatgaaaacaacaaattagttaggggaccaaaaatccaatta 11968591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 13279573 - 13279513
Alignment:
Q  376 aaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaa 436  Q
    |||| |||||| || ||||||||| ||| ||||||||| ||||||||||| ||||||||||    
T  13279573 aaaaagaaaataaaccaggtgttggtgggtcactattacatacaatggacctacaatcaaa 13279513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 572
Target Start/End: Complemental strand, 35037208 - 35037135
Alignment:
Q  499 caaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    ||||||||||||||||| | ||||| || ||||||||||||   |||| | ||||||||||||||  |||||||    
T  35037208 caaaacgttgattttatgagttatgagaccaaaatgaaaactgaaaattaattagaggaccaaaaaaccaatta 35037135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 8206 - 8304
Alignment:
Q  474 actaacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggaccaaaagtccaatta 572  Q
    |||||||||| ||||  |||| |||||||| ||||||||||  | |||||||| ||||||| ||||||  ||| |||||| ||||||||||| ||||||    
T  8206 actaacggagtaaaacgagagggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttaggggaccaaaagttcaatta 8304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 364 - 448
Target Start/End: Complemental strand, 7124 - 7042
Alignment:
Q  364 agaacatgatgaaaaatgaaaattaatcaggtgttgatggttcactattaaatacaatggacatacaatcaaatagttaaaatta 448  Q
    |||| ||||||||||  |||||  ||| ||||||||| |||||||||||||||| ||||||||| ||||||||  ||||||||||    
T  7124 agaagatgatgaaaagcgaaaa--aattaggtgttgacggttcactattaaatataatggacatgcaatcaaacggttaaaatta 7042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 477 - 560
Target Start/End: Complemental strand, 52689 - 52606
Alignment:
Q  477 aacggagcaaaataagagagaccaaaacgttgattttataaattatgggatcaaaatgaaaacaagaaatgacttagaggacca 560  Q
    ||||||| |||||  ||| |||||||||||  ||||||| |||| ||||||||||||||||||  ||||| | |||||||||||    
T  52689 aacggagaaaaatctgagggaccaaaacgtacattttattaattgtgggatcaaaatgaaaacttgaaattaattagaggacca 52606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University