View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2244_low_20 (Length: 239)
Name: NF2244_low_20
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 47006174 - 47006364
Alignment:
| Q |
32 |
ggaggattaaactaactgtctaagagtcccagatgtgaacatctcagtgacaaagttaatgtttctgttggtactatcaacccatgaagtgtagaacttc |
131 |
Q |
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| T |
47006174 |
ggaggattaaactaactgtctaagagtcccagatgtgaacatctcagtgacaaagttaatgtttctgttggtactatcaacccatgaagtgtagaacttc |
47006273 |
T |
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| Q |
132 |
atgatattcttgtgcttcaatgtctcaagaagatgaatttcacagtataacctctcaaggtcttcagaattttgcaaaaaatcataaagct |
222 |
Q |
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| T |
47006274 |
atgatattcttgtgcttcaatgtctcaagaagatgaatttcacagtataacctctcaaggtcttcagaattttgcaaaaaatcataaagct |
47006364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 36199749 - 36199568
Alignment:
| Q |
41 |
aactaactgtctaagagtcccagatgtgaacatctcagtgacaaagttaatgtttctgttggtactatcaacccatgaagtgtagaacttcatgatattc |
140 |
Q |
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| T |
36199749 |
aacttactgtctgagtgtaccagaggtgaacatttcagtgacaaagttaatattcctattagcagtatccacccaagaggtgtaaaatttcataatgttt |
36199650 |
T |
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| Q |
141 |
ttgtgcttcaatg-tctcaagaagatgaatttcacagtataacctctcaaggtcttcagaattttgcaaaaaatcataaagct |
222 |
Q |
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| T |
36199649 |
ttgtgtttcaatgttttcaag-agatgaatttcacagtaaagcctttcaagatcttcaggactttgtaagaaatcatacagct |
36199568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 47354639 - 47354794
Alignment:
| Q |
41 |
aactaactgtctaagagtcccagatgtgaacatctcagtgacaaagttaatgtttctgttggtactatcaacccatgaagtgtagaacttcatgatattc |
140 |
Q |
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|||| ||||||||||||| ||||| || |||| |||||||||||||| || || || || | | |||||||||| ||||| || || ||||| || || |
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| T |
47354639 |
aactcactgtctaagagtaccagaagtaaacaattcagtgacaaagttgatattcctatttgcagtatcaacccaagaagtataaaatttcataatgttt |
47354738 |
T |
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| Q |
141 |
ttgtgcttcaatgtctcaagaagatgaatttcacagtataacctctcaaggtcttc |
196 |
Q |
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| T |
47354739 |
ttgtgcttcaacgtcttgaggagatgaatttcgcagtaaagcctctcgagatcttc |
47354794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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