View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2244_low_22 (Length: 222)
Name: NF2244_low_22
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_low_22 |
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| [»] scaffold1252 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 20883325 - 20883512
Alignment:
| Q |
13 |
gaagcaaaggatgaaattccattttcctcaagtacaaaaatcacaaataaactattgattactctatacagagaaccaagttactacacaactccaattc |
112 |
Q |
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| T |
20883325 |
gaagcaaaggatgaaattccattttcctcaagtacaaaaatcacaaataaactattgattactctatacaaagaaccaagtcactacacaactccaattc |
20883424 |
T |
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| Q |
113 |
aattctatggtaatcctatttcatgcaaatcaaacagttaatgtaaacaaagtaaacttagttagcnnnnnnntaaaatgcaattctc |
200 |
Q |
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| T |
20883425 |
aattctatggtaatcctatttcatgcaaatcaaacagttaatgtaaacaaagtaaacttagttagcaaaaaaataaaatgcaattctc |
20883512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1252 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold1252
Description:
Target: scaffold1252; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 2108 - 1974
Alignment:
| Q |
17 |
caaaggatgaaattcc-attttcctcaagtacaaaaatcacaaa-taaactattgattactctatacagagaaccaagttactacacaactccaattcaa |
114 |
Q |
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|||||||||||||||| ||||| |||| ||| |||||||||| | ||||||||||||||||||||||| |||||||||| | ||| |||||||||||||| |
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| T |
2108 |
caaaggatgaaattcccatttttctcatgtagaaaaatcacacagtaaactattgattactctataca-agaaccaagtcattactcaactccaattcaa |
2010 |
T |
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| Q |
115 |
ttctatggtaatcctatttcatgcaaatcaaacagt |
150 |
Q |
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| T |
2009 |
ttctatggtaatcctatttcatgcaaatcaaacagt |
1974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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