View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2244_low_4 (Length: 539)
Name: NF2244_low_4
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 1768788 - 1769319
Alignment:
| Q |
1 |
ttttccatagcaatagacacagacaaccctccaagactatgaccaacaagaatcacattctcctcacaaggaagtgactccataaatgtcatcaaaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1768788 |
ttttccatagcaatagacacagacaaccctccaagactatgaccaacaagaaccactttctcctcaagaggaagtgactccataaatgtcatcaaaggtt |
1768887 |
T |
|
| Q |
101 |
gatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1768888 |
gatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttag |
1768987 |
T |
|
| Q |
201 |
atcagttgcaaccttataccaacaccatgcaccatggatacctccatgaatcaacacaaagtgcttttcctgtttgaacatcttcaaaatcaatgatagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1768988 |
atcagttgcaaccttataccaacaccatgcaccatggatgcctccatgaatcaacacaaagtgcttttcctgtttgaacatcttcaaaatcaatgatagt |
1769087 |
T |
|
| Q |
301 |
ctttcttgtctatgaaaactacaaatttatatactacatatgaaactagtcttctttcttgtttaagcatctaaaactaataacttttaccttgaaaatt |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1769088 |
ctttcttgtctatgaaaactgcaaatttatatactacatatgaaactagtcttctttcttgtttaagcatctaaaactaataacttttacattgaaaatt |
1769187 |
T |
|
| Q |
401 |
gtgaagttatgattttgatatgcttgacctctattttcaagataaatttcta-----gggttacttaaataatgcctcccttagggctttttattttaaa |
495 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
1769188 |
gtgaagttatgattttgatatgtttgacctctattttcaagataaatttctatttatgggttacttaaacaatgcc-cccttagggctttttattttaaa |
1769286 |
T |
|
| Q |
496 |
aaatatgtttagcatctctattactccctctgt |
528 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
1769287 |
aaatatgtttagcatctctattactccatctgt |
1769319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 1801495 - 1801734
Alignment:
| Q |
27 |
ccctccaagactatgaccaacaagaatcacattctcctcacaaggaagtgactccataaatgtcatcaaaggttgatggtattcagaaattgaatgaacc |
126 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||||| |||||| || |||||||||||||| ||||||| || |||| ||||||||||||| | |
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|
| T |
1801495 |
ccctccaaaactatgacccacaagaatcaccttctcctttggaggaagagattccataaatgtcatgaaaggttcataatattgtgaaattgaatgaatc |
1801594 |
T |
|
| Q |
127 |
tcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaaccttataccaacacc |
226 |
Q |
| |
|
||||| | ||| ||||| || ||||||||||||||| ||| | | ||| || |||||||||||| |||| || ||||||||||||||||||||||| |
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|
| T |
1801595 |
tcttgaacctggattggactgataccacaagcagccaagtcaatagttgtaacattatgaccagctaatttaagcatagttgcaaccttataccaacacc |
1801694 |
T |
|
| Q |
227 |
atgcaccatggatacctccatgaatcaacacaaagtgctt |
266 |
Q |
| |
|
|||||||||||| | ||||||||| | |||||||||||| |
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|
| T |
1801695 |
atgcaccatggaaagctccatgaacaagcacaaagtgctt |
1801734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 27 - 267
Target Start/End: Original strand, 1784685 - 1784925
Alignment:
| Q |
27 |
ccctccaagactatgaccaacaagaatcacattctcctcacaaggaagtgactccataaatgtcatcaaaggttgatggtattcagaaattgaatgaacc |
126 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||||| |||||| || ||||||||||||||||| |||| || |||| ||||||||||||| | |
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|
| T |
1784685 |
ccctccataactatgacccacaagaatcaccttctcctttggaggaagagattccataaatgtcatcaatggttcataatattttgaaattgaatgaatc |
1784784 |
T |
|
| Q |
127 |
tcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaaccttataccaacacc |
226 |
Q |
| |
|
||||| | || |||||||| |||| ||||||||||||| | | ||| || ||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
1784785 |
tcttgaacttgtattggattgatacctgaagcagccatgtcaatagttgtaacattatgaccagctgatttaagcatagttgcaaccttataccaacacc |
1784884 |
T |
|
| Q |
227 |
atgcaccatggatacctccatgaatcaacacaaagtgcttt |
267 |
Q |
| |
|
|| |||||||| | ||||||||| | ||||||||||||| |
|
|
| T |
1784885 |
attcaccatggccagctccatgaacaagcacaaagtgcttt |
1784925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 1772459 - 1772718
Alignment:
| Q |
1 |
ttttccatagcaatagacacagacaaccctccaagactatgaccaacaagaatcacattctcctcacaaggaagtgactccataaatgtcatcaaaggtt |
100 |
Q |
| |
|
||||||||||||| ||| ||||| ||| || |||||||||||||||||||| || ||||| | |||||| || ||||||||||||||||| |||| |
|
|
| T |
1772459 |
ttttccatagcaacagatgtagacaccccacccagactatgaccaacaagaattaccttctcatttggaggaagagattccataaatgtcatcaagggtt |
1772558 |
T |
|
| Q |
101 |
gatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttag |
200 |
Q |
| |
|
|| |||| ||||||||||||| |||||| | || |||||||| |||| ||||||||| || | | ||| || ||||||||||||||||| || |
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|
| T |
1772559 |
cataatattttgaaattgaatgaatctcttggacttgtattggattgatacctgaagcagccaattcaatagttgtaacattatgaccagctgatttaag |
1772658 |
T |
|
| Q |
201 |
atcagttgcaaccttataccaacaccatgcaccatggatacctccatgaatcaacacaaa |
260 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| | || |||||||||| |||||| |
|
|
| T |
1772659 |
catagttaccaccttataccaacaccatgcaccatggcttccaccatgaatcagcacaaa |
1772718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 1777448 - 1777690
Alignment:
| Q |
27 |
ccctccaagactatgaccaacaagaatcacattctcctcacaaggaagtgactccataaatgtcatcaaaggttgatggtattcagaaattga---atga |
123 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| || |||| |||||| || || ||||||| |||||||||| ||| |||| |||||||| |||| |
|
|
| T |
1777448 |
ccctccaaaactatgacccacaagaatcaccttttcctttggaggaagagattctataaatgaaatcaaaggttcatgatattttgaaattgatgaatga |
1777547 |
T |
|
| Q |
124 |
acctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaaccttataccaac |
223 |
Q |
| |
|
| |||||| | ||| ||||| || ||||||||||||||| || | || || || ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
1777548 |
atctcttgaacctgtattggactgataccacaagcagccaattcaattgtggtaacattatgaccagctgatttcaacatggttgcaaccttataccaac |
1777647 |
T |
|
| Q |
224 |
accatgcaccatggatacctccatgaatcaacacaaagtgctt |
266 |
Q |
| |
|
|||||||||||||| | ||||||||| | |||||||||||| |
|
|
| T |
1777648 |
accatgcaccatggccagctccatgaacaagcacaaagtgctt |
1777690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 266
Target Start/End: Complemental strand, 25727763 - 25727524
Alignment:
| Q |
27 |
ccctccaagactatgaccaacaagaatcacattctcctcacaaggaagtgactccataaatgtcatcaaaggttgatggtattcagaaattgaatgaacc |
126 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||||| |||||| || |||||||||||||| ||||||| || |||| ||||||||||||| | |
|
|
| T |
25727763 |
ccctccaaaactatgacccacaagaatcaccttctcctttggaggaagagattccataaatgtcataaaaggttcataatattgtgaaattgaatgaatc |
25727664 |
T |
|
| Q |
127 |
tcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaaccttataccaacacc |
226 |
Q |
| |
|
||||| | ||| ||||| || |||||||| |||||| || | | ||| || ||||||||||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
25727663 |
tcttgaacctgtattggactgataccacaaccagccaattcaatagttgtaacattatgaccagctgatttcagcatagttgcaaccttataccaagacc |
25727564 |
T |
|
| Q |
227 |
atgcaccatggatacctccatgaatcaacacaaagtgctt |
266 |
Q |
| |
|
|||||||||||| | |||||||| | |||||||||||| |
|
|
| T |
25727563 |
atgcaccatggaaaggtccatgaacaagcacaaagtgctt |
25727524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 446
Target Start/End: Complemental strand, 35558962 - 35558883
Alignment:
| Q |
362 |
tttaagcatctaaaactaataacttttaccttgaaaattgtgaagttatgattttgatatgcttgacctctattttcaagataaa |
446 |
Q |
| |
|
||||||||||||||| ||||||||||||| || |||||| || |||||||| ||||| ||||| | ||||||||||||||| |
|
|
| T |
35558962 |
tttaagcatctaaaattaataacttttacgttaaaaatt-----gtcatgatttttatatgtttgacttgtattttcaagataaa |
35558883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 6807571 - 6807634
Alignment:
| Q |
136 |
tgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgatttta |
199 |
Q |
| |
|
|||||||||| | | ||| ||||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
6807571 |
tgctttggatggattccagaagcagccatgtctagtgctgtgacttcgtgtccagcagatttta |
6807634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 6814356 - 6814419
Alignment:
| Q |
136 |
tgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgatttta |
199 |
Q |
| |
|
|||||||||| | | ||| ||||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
6814356 |
tgctttggatggattccagaagcagccatgtctagtgctgtgacttcgtgtccagcagatttta |
6814419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 8633778 - 8633832
Alignment:
| Q |
359 |
ttgtttaagcatctaaaactaa-taacttttaccttgaaaattgtgaagttatga |
412 |
Q |
| |
|
|||||||||||||||||| | | ||| ||||||||||||||||||| |||||||| |
|
|
| T |
8633778 |
ttgtttaagcatctaaaatttagtaagttttaccttgaaaattgtgtagttatga |
8633832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 38902172 - 38902233
Alignment:
| Q |
359 |
ttgtttaagcatctaaaactaataacttttaccttgaaaattgtgaagttatgattttgatat |
421 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| |||||||||||| | |||||| ||| |||| |
|
|
| T |
38902172 |
ttgtttaagcatctaaaaataat-acttttacattgaaaattgtgtaattatgacttttatat |
38902233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 4552271 - 4552219
Alignment:
| Q |
359 |
ttgtttaagcatctaaaactaataacttttaccttgaaaattgtgaagttatg |
411 |
Q |
| |
|
|||||||||||||||||| || ||| | |||| |||||||||||| ||||||| |
|
|
| T |
4552271 |
ttgtttaagcatctaaaaatagtaattattacgttgaaaattgtgtagttatg |
4552219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 440
Target Start/End: Complemental strand, 15064654 - 15064578
Alignment:
| Q |
365 |
aagcatctaaaactaataacttttaccttgaaaattgtgaagttatgatttt-gatatgcttgacctctattttcaa |
440 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||| | |||||||||| ||||| ||||| | ||||||||| |
|
|
| T |
15064654 |
aagcatctaaaagtagtaacttttatattgaaaattgtgtatttatgattttacatatgtttgacttgtattttcaa |
15064578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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