View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2244_low_5 (Length: 438)
Name: NF2244_low_5
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 3323497 - 3323918
Alignment:
| Q |
1 |
agttggtgaatcacacaattatgaaattctaattcatatttgtgataaaacaaatgttccatttgcttggatataagtcacagtgtgaaaatttacttac |
100 |
Q |
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| T |
3323497 |
agttggtgaatcacacaattatgaaattctaattcatatttgtgataaaacaaatgttccatttgcttggatataagtcacagtgtgaaaatttacttac |
3323596 |
T |
|
| Q |
101 |
ttcatataatgatgagtgtgtataaagcattttcttcaaagccttcccatcccattctatagagaactcttgtgcaatatcatataataaccctatcttc |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3323597 |
ttcatataatgatgggtgtgtataaagcattttcttcaaagccttaccatcccattctatagagaactcttgtgcaatatcatataataaccttatcttc |
3323696 |
T |
|
| Q |
201 |
atttctcttgttggagaatgtctcaacttctcaacaaactaaggaacaacaattatttaatcaatccttagaaacaataataataaatatactctacaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3323697 |
atttctcttgttggagaatgtctcaacttctcaacaaactaaggaacaacaattatttaatcaatccttagaaacaataataataaatatactctacaag |
3323796 |
T |
|
| Q |
301 |
ggtggatcattggttttacctctttatttatgtatggttcaagagaatttccatatttttctgtaaacaaagttctaaggtcacgcaattctggtaggtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3323797 |
ggtggatcattggttttacctctttatttatgtatggttcaagagaatttccatatttttctgtaaacaaagttctaaggtcacgcaattctggtaggtc |
3323896 |
T |
|
| Q |
401 |
agaaattctggctgcagcatac |
422 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
3323897 |
agaaattcttgctgcagcatac |
3323918 |
T |
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