View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2244_low_9 (Length: 391)
Name: NF2244_low_9
Description: NF2244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2244_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 34 - 373
Target Start/End: Complemental strand, 30275057 - 30274718
Alignment:
| Q |
34 |
ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa |
133 |
Q |
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| T |
30275057 |
ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa |
30274958 |
T |
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| Q |
134 |
aatgtaattttattnnnnnnntatgtggtgacatagtaactttgaaagaatattattgtcctttagtttaatgtgtctgaatatggataattgattgatt |
233 |
Q |
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| T |
30274957 |
aatgtaattttattaaaaaaatatgtggtgacatagtaacattgaaagaatattattgtcctttagtttaatgtgtctgaatatggataattgattgatt |
30274858 |
T |
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| Q |
234 |
attgattatttgtttgttgacgtaacagattgaagcaccgtggccctgattggagtgggctccaccaacatggtgactgctttttggcacaccaacggtt |
333 |
Q |
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| T |
30274857 |
attgattatttgtttgttgacgtaacagattgaagcaccgtggccctgattggagtgggctccaccaacatggtgactgctttttggcacaccaacggtt |
30274758 |
T |
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| Q |
334 |
agccatagttgatcctgcttctggggatcaacctctcttt |
373 |
Q |
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| T |
30274757 |
agccatagttgatcctgcttctggggatcaacctctcttt |
30274718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 25967486 - 25967372
Alignment:
| Q |
258 |
acagattgaagcaccgtggccctgattggagtgggctccaccaacatggtgactgctttttggcacaccaacggttagccatagttgatcctgcttctgg |
357 |
Q |
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| T |
25967486 |
acagattgaagcaccgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccattgttgatcctgcttctgg |
25967387 |
T |
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| Q |
358 |
ggatcaacctctctt |
372 |
Q |
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| T |
25967386 |
tgatcaacctctctt |
25967372 |
T |
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