View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2245_high_2 (Length: 446)
Name: NF2245_high_2
Description: NF2245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2245_high_2 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 33217973 - 33218418
Alignment:
| Q |
1 |
agtggagaagcatagggaaaggcggctaatgttgcttcaatctatttagtaccaacttcagattgaagacgtgtccgatatgttttagtgtccaacatcg |
100 |
Q |
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||||||||| |||| ||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33217973 |
agtggagaattatagtaaaagggggctgatgttgcctcaatctatgtagtaccaacttcagattgaagacgtgtccgatatgttttaatgtccaacatcg |
33218072 |
T |
|
| Q |
101 |
agatattttcaaattattacgttgcctatgtgtcagcgttgtgtctgatgtttgtggtcgttaggcctttatttaaaacgtgcataactaaaggatggtt |
200 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33218073 |
agatattttcaaattattacgttacccatgtgtcagcgttgtgtctgatgtttgtggtcgttaggcctttatttaaaacgtgcataactaaaggatggtt |
33218172 |
T |
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| Q |
201 |
gattccattgagctaaggaattttttaaagggggtgctgttagtaggtcaaatagatttttactaataaatgttgatcatgtagctgattttgatgaatg |
300 |
Q |
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| T |
33218173 |
gattccattgagctaaggaaatttttaaagggggtgctattagtaggtcaaatagatttttactaataaatgttgatcatgtagctgattttgatgaatg |
33218272 |
T |
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| Q |
301 |
aaaagtgtaggtcaatttggctctcatggagcttttggtcaaggtaatgtttgtgaaagtagattgatggatctccttcatggttcagaatatgtcctca |
400 |
Q |
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| T |
33218273 |
aaaagtgtaggtcaatttggctctcatggagtttttggtcaaggtaatgtttgtgaaagtagattgatggatctccttcatggttcagaatatgtcctca |
33218372 |
T |
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| Q |
401 |
cctatgaagataaagatggtgattggatgctagttggtgatgttcc |
446 |
Q |
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| T |
33218373 |
cctatgaagataaagatggtgattggatgctagttggtgatgttcc |
33218418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 43392206 - 43392113
Alignment:
| Q |
353 |
gtgaaagtagattgatggatctccttcatggttcagaatatgtcctcacctatgaagataaagatggtgattggatgctagttggtgatgttcc |
446 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
43392206 |
gtgaaagtagattggtggatctccttcatggttcagaatatgtgcttacctatgaagacaaggatggtgattggatgctagttggtgatgttcc |
43392113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 431
Target Start/End: Complemental strand, 28201761 - 28201683
Alignment:
| Q |
353 |
gtgaaagtagattgatggatctccttcatggttcagaatatgtcctcacctatgaagataaagatggtgattggatgct |
431 |
Q |
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| T |
28201761 |
gtgagagtaaattgaaggacttcctgcatggttctgaatatgtggtcacttatgaagataaagatggtgactggatgct |
28201683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 28452428 - 28452505
Alignment:
| Q |
369 |
ggatctccttcatggttcagaatatgtcctcacctatgaagataaagatggtgattggatgctagttggtgatgttcc |
446 |
Q |
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|||||| |||||||| ||||||||||| | || ||||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
28452428 |
ggatctgcttcatgggtcagaatatgttattacttatgaggataaagatggtgattggatgcttgtcggtgatgttcc |
28452505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 13124106 - 13124054
Alignment:
| Q |
379 |
catggttcagaatatgtcctcacctatgaagataaagatggtgattggatgct |
431 |
Q |
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| T |
13124106 |
catggttcagaatatgttctcacttatgaagataaagatggagactggatgct |
13124054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 33848651 - 33848608
Alignment:
| Q |
403 |
tatgaagataaagatggtgattggatgctagttggtgatgttcc |
446 |
Q |
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| T |
33848651 |
tatgaagataaagatggtgattggatgttagttggagatgttcc |
33848608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 33945327 - 33945370
Alignment:
| Q |
403 |
tatgaagataaagatggtgattggatgctagttggtgatgttcc |
446 |
Q |
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| T |
33945327 |
tatgaagataaagatggtgattggatgttagttggagatgttcc |
33945370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 35974623 - 35974580
Alignment:
| Q |
403 |
tatgaagataaagatggtgattggatgctagttggtgatgttcc |
446 |
Q |
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| T |
35974623 |
tatgaagacaaagatggtgattggatgcttgttggtgatgttcc |
35974580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 31370760 - 31370803
Alignment:
| Q |
403 |
tatgaagataaagatggtgattggatgctagttggtgatgttcc |
446 |
Q |
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|||||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
31370760 |
tatgaagacaaagatggtgattggatgcttgttggagatgttcc |
31370803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 15064585 - 15064631
Alignment:
| Q |
400 |
acctatgaagataaagatggtgattggatgctagttggtgatgttcc |
446 |
Q |
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| T |
15064585 |
acctatgaagacaaggatggtgactggatgctagttggagatgttcc |
15064631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 431
Target Start/End: Complemental strand, 43635399 - 43635332
Alignment:
| Q |
364 |
ttgatggatctccttcatggttcagaatatgtcctcacctatgaagataaagatggtgattggatgct |
431 |
Q |
| |
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|||| |||||| |||||||| || || ||||| || || ||||||||||||||||| ||||||||||| |
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| T |
43635399 |
ttgagggatcttcttcatggatctgagtatgttcttacatatgaagataaagatggagattggatgct |
43635332 |
T |
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