View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2245_high_4 (Length: 392)
Name: NF2245_high_4
Description: NF2245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2245_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 30315644 - 30315281
Alignment:
| Q |
18 |
aagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaatttcatttaattttggtagaaaact |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30315644 |
aagtagaaccaaatattttaaataatgttaacatgtcattaaaaataaaaaataactaatataggctacattcaatttaatttaattttggtagaaaact |
30315545 |
T |
|
| Q |
118 |
attgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatcc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315544 |
attgtaattaggccatacagaaggaaagagaccgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatcc |
30315445 |
T |
|
| Q |
218 |
aagcaaagagagatccgaggaagcctttacgacaattggatgacctgccggaattacataaacatcacctggagacaacctagccctatacctttgtact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315444 |
aagcaaagagagatccgaggaagcctttacgacaattggatgacctgcgggaattacataaacatcacctggagacaacctagccctatacctttgtact |
30315345 |
T |
|
| Q |
318 |
tgttggcttctttcttgttgttgttcatcttcctcatattctctctgctcttgctggttttcat |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30315344 |
tgttggcttctttcttgttgttgttcatcttcttcatattctctctgctcttgctggttttcat |
30315281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 30287057 - 30286700
Alignment:
| Q |
18 |
aagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaatttcatttaattttggtagaaaact |
117 |
Q |
| |
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|||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| |||||||||||||| ||||||||||||||| ||||| |
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| T |
30287057 |
aagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggtaggaaact |
30286958 |
T |
|
| Q |
118 |
attgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatcc |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
30286957 |
attgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagttcctttgattgttctccgcattgataccaaatcc |
30286864 |
T |
|
| Q |
218 |
aagcaaagagagatccgaggaagcctttacgacaattggatgacctgccggaattacataaacatcacctggagacaacctagccctatacctttgtact |
317 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286863 |
aagcaaagagagatccgaagaagcagttacgacaattggatgacctgccggaattacataaacatcacctggagacaacctagccctatacctttgtact |
30286764 |
T |
|
| Q |
318 |
tgttggcttctttcttgttgttgttcatcttcctcatattctctctgctcttgctggttttcat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30286763 |
tgttggcttctttcttgttgttgttcatcttcctcatattctctctgctcttgctggttttcat |
30286700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 30292091 - 30291734
Alignment:
| Q |
18 |
aagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaatttcatttaattttggtagaaaact |
117 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| |||||||||||||| ||||||||||||||| ||||| |
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| T |
30292091 |
aagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggtaggaaact |
30291992 |
T |
|
| Q |
118 |
attgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatcc |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
30291991 |
attgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgataccaaatcc |
30291898 |
T |
|
| Q |
218 |
aagcaaagagagatccgaggaagcctttacgacaattggatgacctgccggaattacataaacatcacctggagacaacctagccctatacctttgtact |
317 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||||||| ||| |
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|
| T |
30291897 |
aagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggagtcaacctagccctgtacctttgcact |
30291798 |
T |
|
| Q |
318 |
tgttggcttctttcttgttgttgttcatcttcctcatattctctctgctcttgctggttttcat |
381 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30291797 |
tgttggcttctctcttcttcttgttcatcttcctcatattctctctgctcttgctggttttcat |
30291734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 30304725 - 30304368
Alignment:
| Q |
18 |
aagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaatttcatttaattttggtagaaaact |
117 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| |||||||||||||| ||||||||||||||| ||||| |
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|
| T |
30304725 |
aagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggtaggaaact |
30304626 |
T |
|
| Q |
118 |
attgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatcc |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
30304625 |
attgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgataccaaatcc |
30304532 |
T |
|
| Q |
218 |
aagcaaagagagatccgaggaagcctttacgacaattggatgacctgccggaattacataaacatcacctggagacaacctagccctatacctttgtact |
317 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||||||| ||| |
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| T |
30304531 |
aagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggagtcaacctagccctgtacctttgcact |
30304432 |
T |
|
| Q |
318 |
tgttggcttctttcttgttgttgttcatcttcctcatattctctctgctcttgctggttttcat |
381 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30304431 |
tgttggcttctctcttcttcttgttcatcttcctcatattctctctgctcttgctggttttcat |
30304368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 169 - 381
Target Start/End: Complemental strand, 30299370 - 30299161
Alignment:
| Q |
169 |
taccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgccgg |
268 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |
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|
| T |
30299370 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgg |
30299271 |
T |
|
| Q |
269 |
aattacataaacatcacctggagacaacctagccctatacctttgtacttgttggcttct---ttcttgttgttgttcatcttcctcatattctctctgc |
365 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||| |
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|
| T |
30299270 |
aattacatacacatcacctggagacaacctagctctgtacctttgcacttgttggcttctctcttcttcttgttgttcatcttc------ttctctctgc |
30299177 |
T |
|
| Q |
366 |
tcttgctggttttcat |
381 |
Q |
| |
|
||||| ||||| |||| |
|
|
| T |
30299176 |
tcttgttggttctcat |
30299161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 301
Target Start/End: Complemental strand, 46810333 - 46810199
Alignment:
| Q |
167 |
tataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgcc |
266 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||| |||| | | | ||| ||||||||| |
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| T |
46810333 |
tatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagattcgaggaagcatttatggctactgggtgacctgcc |
46810234 |
T |
|
| Q |
267 |
ggaattacataaacatcacctggagacaacctagc |
301 |
Q |
| |
|
||||||| | ||| || |||||||||| |||||| |
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|
| T |
46810233 |
ggaattataacaacgtcgcctggagacagcctagc |
46810199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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