View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2245_low_1 (Length: 707)

Name: NF2245_low_1
Description: NF2245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2245_low_1
NF2245_low_1
[»] chr4 (6 HSPs)
chr4 (1-691)||(10250725-10251441)
chr4 (427-681)||(17192843-17193097)
chr4 (434-628)||(22745509-22745703)
chr4 (152-234)||(22745998-22746080)
chr4 (152-234)||(28045313-28045395)
chr4 (438-671)||(141214-141447)
[»] chr3 (2 HSPs)
chr3 (406-683)||(19662481-19662758)
chr3 (157-234)||(19662950-19663027)
[»] chr6 (4 HSPs)
chr6 (144-230)||(11142066-11142152)
chr6 (155-215)||(18483733-18483793)
chr6 (153-228)||(14567903-14567978)
chr6 (565-628)||(19003279-19003342)
[»] scaffold0007 (2 HSPs)
scaffold0007 (447-628)||(446-627)
scaffold0007 (176-234)||(791-849)
[»] scaffold0074 (2 HSPs)
scaffold0074 (565-681)||(43316-43432)
scaffold0074 (152-227)||(43749-43824)
[»] chr7 (1 HSPs)
chr7 (153-224)||(32221300-32221371)


Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 691
Target Start/End: Original strand, 10250725 - 10251441
Alignment:
Q  1 gatagcgacgtgagacaagaaagacctcgcggtggcccgcctttgcttgaacggtggtaaccgcaccagaatttatctccatttgagagatacactaggg 100  Q
    ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10250725 gatagtgacgtgagacaagaaagacctctccgtggcccgcctttgcttgaacggtggtaaccgcaccagaatttatctccatttgagagatacactaggg 10250824  T
Q  101 ggtaggtatgcagcctaggtagtagaaaatnnnnnnnnnnnnna------taggtgtgattggtctgtagttaggtcacgaaagaggaaagcgacgcaat 194  Q
    |||||||||||||||| ||| |||||||||                    || | |||||||||||||||||||||||||||||||||||||||||||||    
T  10250825 ggtaggtatgcagcctgggtggtagaaaatggggggggggggggggggggtatgggtgattggtctgtagttaggtcacgaaagaggaaagcgacgcaat 10250924  T
Q  195 cggaagatcgaggaagggacaagtcaagggtttcagagcgacgcggaggcacggtaatggttagagggatcgcacataatgattatgggtttgatggcag 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  10250925 cggaagatcgaggaagggacaagtcaagggtttcagagcgacgcggaggcacggtaagggttagagggatcgcacataatgattacgggtttgatggcag 10251024  T
Q  295 agaggcgcgacaatca--------------------gcaaggtttgggtcattatcagtatggaaacaacggtttggctttcgacagatgcgggtctgat 374  Q
    ||||||||||||||||                    |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  10251025 agaggcgcgacaatcagcaagggctcttcatgatcagcaaggtttgggtcgttatcagtttggaaacaacgatttggctttcgacagatgcgggtctgat 10251124  T
Q  375 gctatcatgggaaaagctttcttcgacgacaaacataacaatggtagtaaaattactttctattttgcaaacattcctgattatatgccgttgtttcgtc 474  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10251125 gctatcatgggaaaaggcttcttcgacgacaaacataacaatggtagtaaaattactttctattttgcaaacattcctgattatatgccgttgtttcgtc 10251224  T
Q  475 tccgtcaatactttgaagtgtgtggtattttgtctgatatctatatagctagacaattcaattctcgtggtcaattttatggcttcgttggatttttcaa 574  Q
    |||||||||||||||||||||||||||||||||||||| ||||| | || |||||| | ||||| ||||||||  | |||||||||||| ||||||| ||    
T  10251225 tccgtcaatactttgaagtgtgtggtattttgtctgatgtctatgttgccagacaactaaattcacgtggtcaggtctatggcttcgttagatttttgaa 10251324  T
Q  575 tgtgaggaacaaggacaaattagcacaagatttgaataatgtatggattggtgactttaaggtctgggcgcgtgaagcaaaatttgacaggtttgcacaa 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10251325 tgtgaggaacaaggacaaattagcacaagatttgaataatgtatggattggtgactttaaggtctgggcgcgtgaagcaaaatttgataggtttgcacaa 10251424  T
Q  675 tatgatgatgatcatag 691  Q
    |||||||||||||||||    
T  10251425 tatgatgatgatcatag 10251441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 427 - 681
Target Start/End: Complemental strand, 17193097 - 17192843
Alignment:
Q  427 ttactttctattttgcaaacattcctgattatatgccgttgtttcgtctccgtcaatactttgaagtgtgtggtattttgtctgatatctatatagctag 526  Q
    ||||||| |||||||| || |||||||| | |||||| ||||| ||||| |||||||  || || ||||||||||| ||||||||||| ||| | |||||    
T  17193097 ttactttttattttgctaatattcctgactgtatgccattgttccgtctacgtcaatttttcgaggtgtgtggtatattgtctgatatttatgttgctag 17192998  T
Q  527 acaattcaattctcgtggtcaattttatggcttcgttggatttttcaatgtgaggaacaaggacaaattagcacaagatttgaataatgtatggattggt 626  Q
    | || |||||| |||||||||| |||| || |||||| |||||   ||||| |||||||  || ||||| |||   | |||||||||||| |||||||||    
T  17192997 aaaactcaattatcgtggtcaagtttacggtttcgttagatttgagaatgtaaggaacatagaaaaattggcaagtgctttgaataatgtctggattggt 17192898  T
Q  627 gactttaaggtctgggcgcgtgaagcaaaatttgacaggtttgcacaatatgatg 681  Q
    ||   || ||| |||||  | ||||| |  ||||||||||||||||||| |||||    
T  17192897 gatcatagggtttgggctagggaagctaggtttgacaggtttgcacaatttgatg 17192843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 434 - 628
Target Start/End: Complemental strand, 22745703 - 22745509
Alignment:
Q  434 ctattttgcaaacattcctgattatatgccgttgtttcgtctccgtcaatactttgaagtgtgtggtattttgtctgatatctatatagctagacaattc 533  Q
    ||||||||| || ||||||||   ||||||| | || ||| | |||| ||| ||||||||||| || ||| |||||||| | ||  ||||||||||| ||    
T  22745703 ctattttgctaatattcctgaccttatgccgctattccgtttacgtcgatattttgaagtgtgcggcattctgtctgatgtatacgtagctagacaactc 22745604  T
Q  534 aattctcgtggtcaattttatggcttcgttggatttttcaatgtgaggaacaaggacaaattagcacaagatttgaataatgtatggattggtga 628  Q
    ||||| ||||||||  |||||||||| ||| |||| || ||||| |||||||  || ||||| || |||| |||||||||||| |||||||||||    
T  22745603 aattcacgtggtcaggtttatggctttgtttgattcttgaatgttaggaacagagataaattggcccaagctttgaataatgtttggattggtga 22745509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 22746080 - 22745998
Alignment:
Q  152 gattggtctgtagttaggtcacgaaagaggaaagcgacgcaatcggaagatcgaggaagggacaagtcaagggtttcagagcg 234  Q
    ||||||||||||||||||||| |||||||||||||||||||| | || ||||||||| || |||  |||||| ||||||||||    
T  22746080 gattggtctgtagttaggtcaagaaagaggaaagcgacgcaaccagaggatcgaggacggtacagttcaaggttttcagagcg 22745998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 28045313 - 28045395
Alignment:
Q  152 gattggtctgtagttaggtcacgaaagaggaaagcgacgcaatcggaagatcgaggaagggacaagtcaagggtttcagagcg 234  Q
    |||||||||||||||||||| || ||  |||||||||| ||| |||| ||||||||| |||||| |||||||| |||||||||    
T  28045313 gattggtctgtagttaggtctcggaaacggaaagcgacacaaccggaggatcgaggacgggacaggtcaaggggttcagagcg 28045395  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 671
Target Start/End: Complemental strand, 141447 - 141214
Alignment:
Q  438 tttgcaaacattcctgattatatgccgttgtttcgtctccgtcaatactttgaagtgtgtggtattttgtctgatatctatatagctagacaattcaatt 537  Q
    ||||||||||||||||||| |||||| || || ||| | || |||| ||| || || || || ||  |||||||| | ||||| ||||||||| | ||||    
T  141447 tttgcaaacattcctgattttatgccattattccgtttacgacaatgcttcgaggtatgcggcatcctgtctgatgtgtatattgctagacaactaaatt 141348  T
Q  538 ctcgtggtcaattttatggcttcgttggatttttcaatgtgaggaacaaggacaaattagcacaagatttgaataatgtatggattggtgactttaaggt 637  Q
    | || |||||  ||||||| || ||  ||||| | ||||||| ||||| ||  || |||||  | | |||||||||||| ||||| ||||| |||| |||    
T  141347 cacgcggtcaggtttatggttttgtaagatttctgaatgtgaagaacatggcgaagttagcgtaggctttgaataatgtgtggataggtgattttagggt 141248  T
Q  638 ctgggcgcgtgaagcaaaatttgacaggtttgca 671  Q
     ||||| |||||||||   || ||||||||||||    
T  141247 ttgggcacgtgaagcacgtttcgacaggtttgca 141214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 406 - 683
Target Start/End: Complemental strand, 19662758 - 19662481
Alignment:
Q  406 aacataacaatggtagtaaaattactttctattttgcaaacattcctgattatatgccgttgtttcgtctccgtcaatactttgaagtgtgtggtatttt 505  Q
    |||| |||||||| |||||  ||||||| |||||| | || ||||  || | | |||| ||||| ||| | || |||||||||||  |||||||||||||    
T  19662758 aacacaacaatggcagtaaggttactttttattttactaatattctcgactttctgccattgttccgtttacgacaatactttgagatgtgtggtatttt 19662659  T
Q  506 gtctgatatctatatagctagacaattcaattctcgtggtcaattttatggcttcgttggatttttcaatgtgaggaacaaggacaaattagcacaagat 605  Q
    ||||||| ||||| | || |||||| | ||||| ||||||||  | |||||||||||| |||||||  || ||||||| |  |||||||||||||| | |    
T  19662658 gtctgatgtctatgttgccagacaactaaattcacgtggtcaggtctatggcttcgttagatttttgtatatgaggaatatagacaaattagcacatgct 19662559  T
Q  606 ttgaataatgtatggattggtgactttaaggtctgggcgcgtgaagcaaaatttgacaggtttgcacaatatgatgat 683  Q
    |||||||||| ||||||  ||||   || | | ||||| ||||||||||  |||||||||||||| ||  ||||||||    
T  19662558 ttgaataatgcatggatcagtgatcataggttttgggctcgtgaagcaaggtttgacaggtttgcgcatcatgatgat 19662481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 19663027 - 19662950
Alignment:
Q  157 gtctgtagttaggtcacgaaagaggaaagcgacgcaatcggaagatcgaggaagggacaagtcaagggtttcagagcg 234  Q
    |||| ||||||||||| | | ||||||||||| ||||| ||| ||||||||| ||| |||||||||||||||||||||    
T  19663027 gtctttagttaggtcaaggatgaggaaagcgatgcaatgggaggatcgaggacggggcaagtcaagggtttcagagcg 19662950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 11142152 - 11142066
Alignment:
Q  144 ataggtgtgattggtctgtagttaggtcacgaaagaggaaagcgacgcaatcggaagatcgaggaagggacaagtcaagggtttcag 230  Q
    ||||| ||||||||||||||||||||||  | |||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||    
T  11142152 ataggagtgattggtctgtagttaggtctaggaagaggaaagcgacgcaaccggaggatcgaggacgggacaggtcaagggtttcag 11142066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 18483733 - 18483793
Alignment:
Q  155 tggtctgtagttaggtcacgaaagaggaaagcgacgcaatcggaagatcgaggaagggaca 215  Q
    ||||||||||| ||||| || ||| |||||||||||||| |||| ||||||||| ||||||    
T  18483733 tggtctgtagtcaggtctcggaagcggaaagcgacgcaaccggaggatcgaggatgggaca 18483793  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 14567978 - 14567903
Alignment:
Q  153 attggtctgtagttaggtcacgaaagaggaaagcgacgcaatcggaagatcgaggaagggacaagtcaagggtttc 228  Q
    |||||||| | || |||||| | | |||||||||||||||| |||| ||| ||||| |||||| ||||||||||||    
T  14567978 attggtctatggtcaggtcatgcaggaggaaagcgacgcaaccggaggatagaggacgggacatgtcaagggtttc 14567903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 628
Target Start/End: Original strand, 19003279 - 19003342
Alignment:
Q  565 gatttttcaatgtgaggaacaaggacaaattagcacaagatttgaataatgtatggattggtga 628  Q
    ||||||| ||||||| |||||| || ||||||| ||| | |||||||||| |||||||||||||    
T  19003279 gatttttgaatgtgaagaacaaagataaattagaacaggctttgaataatttatggattggtga 19003342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 447 - 628
Target Start/End: Complemental strand, 627 - 446
Alignment:
Q  447 attcctgattatatgccgttgtttcgtctccgtcaatactttgaagtgtgtggtattttgtctgatatctatatagctagacaattcaattctcgtggtc 546  Q
    |||||||| | |||| ||||||| ||| | ||| | ||| | ||||||||||| ||| | | |||| | ||| | || ||| |||| ||||| |||||||    
T  627 attcctgactttatgtcgttgttccgtttacgttagtacatcgaagtgtgtggaattctatatgatgtgtatgttgccagaaaattaaattcacgtggtc 528  T
Q  547 aattttatggcttcgttggatttttcaatgtgaggaacaaggacaaattagcacaagatttgaataatgtatggattggtga 628  Q
    |  ||||||| || ||  ||||||| ||||||| |||||| || ||||||||||| | |||||||||||| |||||||||||    
T  527 aggtttatggttttgtaagatttttgaatgtgaagaacaaagataaattagcacaggctttgaataatgtgtggattggtga 446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 849 - 791
Alignment:
Q  176 aagaggaaagcgacgcaatcggaagatcgaggaagggacaagtcaagggtttcagagcg 234  Q
    |||||||||||||| ||| || | ||||||||| |||||| ||||||||||||| ||||    
T  849 aagaggaaagcgacacaaccgaaggatcgaggacgggacatgtcaagggtttcaaagcg 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 681
Target Start/End: Complemental strand, 43432 - 43316
Alignment:
Q  565 gatttttcaatgtgaggaacaaggacaaattagcacaagatttgaataatgtatggattggtgactttaaggtctgggcgcgtgaagcaaaatttgacag 664  Q
    ||||||| ||||||| |||||| || ||||||||||  | |||||||||||| |||||||||||   || ||| || || |||||||||   | ||| ||    
T  43432 gatttttgaatgtgaagaacaaagataaattagcactggctttgaataatgtgtggattggtgaacatagggtttgcgctcgtgaagcacggtatgatag 43333  T
Q  665 gtttgcacaatatgatg 681  Q
    |||||||||||||||||    
T  43332 gtttgcacaatatgatg 43316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 43824 - 43749
Alignment:
Q  152 gattggtctgtagttaggtcacgaaagaggaaagcgacgcaatcggaagatcgaggaagggacaagtcaagggttt 227  Q
    ||||||||| ||||||||| | | ||||||||||| |||||| |||| ||||||||| |||| | |||||||||||    
T  43824 gattggtctatagttaggtaaaggaagaggaaagcaacgcaaccggaggatcgaggacgggagaggtcaagggttt 43749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 32221371 - 32221300
Alignment:
Q  153 attggtctgtagttaggtcacgaaagaggaaagcgacgcaatcggaagatcgaggaagggacaagtcaaggg 224  Q
    |||||||| ||||||||||  | |||||||||||||||||| |||| ||||||||| |||||| ||| ||||    
T  32221371 attggtctctagttaggtctaggaagaggaaagcgacgcaaccggaggatcgaggacgggacaggtctaggg 32221300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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