View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2245_low_3 (Length: 409)
Name: NF2245_low_3
Description: NF2245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2245_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 53 - 409
Target Start/End: Complemental strand, 52034209 - 52033853
Alignment:
| Q |
53 |
tgagggaatgaagcgtacgtacctgattagtggtggcagttatgatggcaacgggaagagtaaaaatgagtgcaagtccagaagcaaagatgagagccca |
152 |
Q |
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| T |
52034209 |
tgagggaatgaagcgtacgtacctgattagtggtggcagttatgatggcaacgggaagagtaaaaatgagtgcaagtccagaagcaaagatgagagccca |
52034110 |
T |
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| Q |
153 |
ccatggcatttgtatctcttctttcatgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatgaaaccaccaattaggtatgtct |
252 |
Q |
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| T |
52034109 |
ccatggcatttgtatctcttctttcttgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatgaaaccaccaattaggtatgtct |
52034010 |
T |
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| Q |
253 |
ttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgcagttagttaatttaatcagca |
352 |
Q |
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| T |
52034009 |
ttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgcagttagttaatttaatcagca |
52033910 |
T |
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| Q |
353 |
atagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataac |
409 |
Q |
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| T |
52033909 |
atagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataac |
52033853 |
T |
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