View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2245_low_5 (Length: 378)

Name: NF2245_low_5
Description: NF2245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2245_low_5
NF2245_low_5
[»] chr8 (2 HSPs)
chr8 (1-199)||(3427967-3428165)
chr8 (198-347)||(3427795-3427944)
[»] chr5 (8 HSPs)
chr5 (55-197)||(9211459-9211606)
chr5 (55-197)||(9369879-9370026)
chr5 (201-236)||(19242401-19242436)
chr5 (201-243)||(9211389-9211431)
chr5 (201-234)||(12560227-12560260)
chr5 (203-235)||(12556985-12557017)
chr5 (153-197)||(12560154-12560198)
chr5 (153-197)||(19242464-19242508)
[»] chr3 (7 HSPs)
chr3 (201-236)||(20798780-20798815)
chr3 (201-243)||(9450789-9450831)
chr3 (201-243)||(17724638-17724680)
chr3 (201-243)||(19025867-19025909)
chr3 (201-243)||(26640805-26640847)
chr3 (201-243)||(28838401-28838443)
chr3 (201-233)||(28830446-28830478)
[»] chr7 (1 HSPs)
chr7 (201-243)||(19545424-19545466)
[»] chr1 (2 HSPs)
chr1 (201-243)||(1466862-1466904)
chr1 (201-243)||(35923325-35923367)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 3428165 - 3427967
Alignment:
Q  1 gtgagctagggtatgaactgctgacacttgaatggtgtttagaatgtcataatataagtcccacatcggaagatttgtagtgaataatgtggagcatgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  3428165 gtgagctagggtatgaactgctgacacttgaatggtgtttagaatgtaataataaaagtcccacatcggaagatttatagtgaataatgtggagcatgag 3428066  T
Q  101 ttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgttgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcacct 199  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428065 ttataaaatagaagtgtgtgacacattgcagcatacttacctggcaggtgttgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcacct 3427967  T

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Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 198 - 347
Target Start/End: Complemental strand, 3427944 - 3427795
Alignment:
Q  198 ctgcccaagtggtggagcttacatcataatttgttgcagtaggggcatgctaatatactgtgctcatcttctccttttgatgcaattgttgaaggttgaa 297  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3427944 ctgcccaagtggtggagtttacatcgtaatttgttgcagtaggggcatgctaatatattgtgctcatcttctccttttgatgcaattgttgaaggttgaa 3427845  T
Q  298 atttgcgggctgattaggttgggtaaatatccgatggaagctactactta 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3427844 atttgcgggctgattaggttgggtaaatatccgatggaagctactactta 3427795  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 9211606 - 9211459
Alignment:
Q  55 taagtcccacatcggaagatttgtagtgaataatgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgt--- 151  Q
    |||||||||||||||||| ||| ||||||||  | ||||||||||||||||||| |||| ||||||| |||||| |||||||||||||||| || ||       
T  9211606 taagtcccacatcggaagttttatagtgaatgttatggagcatgagttataaaacagaattgtgtgatacattgtaacatacttacctggatggggtcaa 9211507  T
Q  152 --tgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 197  Q
       ||||||| |||||||||| | ||||||  ||||||| ||||||||    
T  9211506 tgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcac 9211459  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 9369879 - 9370026
Alignment:
Q  55 taagtcccacatcggaagatttgtagtgaataatgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgt--- 151  Q
    |||||||||||||||||| ||| ||||||||  | ||||||||||||||||||| |||| |||||||  |||||||||||||||||||||| || ||       
T  9369879 taagtcccacatcggaagttttatagtgaatgttatggagcatgagttataaaagagaattgtgtgattcattgcaacatacttacctggatggggtcaa 9369978  T
Q  152 --tgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 197  Q
       |||||||| ||||||||| | ||||||  ||||||| ||||||||    
T  9369979 tgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcac 9370026  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 19242436 - 19242401
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcag 236  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19242436 cccaagtggtggagcctacatcataatttgttgcag 19242401  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 9211431 - 9211389
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcagtaggggc 243  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  9211431 cccaagtggtggagcctacatcataatttgttgctgtgggggc 9211389  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 12560227 - 12560260
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgc 234  Q
    ||||||||||||||| ||||||||||||||||||    
T  12560227 cccaagtggtggagcctacatcataatttgttgc 12560260  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 12556985 - 12557017
Alignment:
Q  203 caagtggtggagcttacatcataatttgttgca 235  Q
    ||||||||||||| |||||||||||||||||||    
T  12556985 caagtggtggagcctacatcataatttgttgca 12557017  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 12560154 - 12560198
Alignment:
Q  153 gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 197  Q
    |||||||||||||||||| | ||||||  ||||||||||||||||    
T  12560154 gtgatcaagaaggcccatggcctaggcaagtgacctccattgcac 12560198  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 19242508 - 19242464
Alignment:
Q  153 gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 197  Q
    |||||||||||||||||| | ||||||  ||||||||||||||||    
T  19242508 gtgatcaagaaggcccatggcctaggcaagtgacctccattgcac 19242464  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 20798815 - 20798780
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcag 236  Q
    ||||||||||||||| ||||||||||||||||||||    
T  20798815 cccaagtggtggagcctacatcataatttgttgcag 20798780  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 9450789 - 9450831
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcagtaggggc 243  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  9450789 cccaagtggtggagcctacatcataatttgttgctgtgggggc 9450831  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 17724638 - 17724680
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcagtaggggc 243  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  17724638 cccaagtggtggagcctacatcataatttgttgctgtgggggc 17724680  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 19025867 - 19025909
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcagtaggggc 243  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  19025867 cccaagtggtggagcctacatcataatttgttgctgtgggggc 19025909  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 26640805 - 26640847
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcagtaggggc 243  Q
    ||||||||||||| | ||||||||||||||||||||| |||||    
T  26640805 cccaagtggtggaacctacatcataatttgttgcagtgggggc 26640847  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 28838443 - 28838401
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcagtaggggc 243  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  28838443 cccaagtggtggagcctacatcataatttgttgctgtgggggc 28838401  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 28830478 - 28830446
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttg 233  Q
    ||||||||||||||| |||||||||||||||||    
T  28830478 cccaagtggtggagcctacatcataatttgttg 28830446  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 19545466 - 19545424
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcagtaggggc 243  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  19545466 cccaagtggtggagcctacatcataatttgttgctgtgggggc 19545424  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 1466862 - 1466904
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcagtaggggc 243  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  1466862 cccaagtggtggagcctacatcataatttgttgctgtgggggc 1466904  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 35923325 - 35923367
Alignment:
Q  201 cccaagtggtggagcttacatcataatttgttgcagtaggggc 243  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  35923325 cccaagtggtggagcctacatcataatttgttgctgtgggggc 35923367  T

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