View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2246_high_10 (Length: 315)
Name: NF2246_high_10
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 158 - 302
Target Start/End: Original strand, 24982822 - 24982967
Alignment:
| Q |
158 |
ttagccaatccaacgtgccacataaggcgttgctgcatgagggtttaaaatcaaagaatcttgaaattataaagggaaa-cttcnnnnnnnnnttttaca |
256 |
Q |
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|||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| || ||||||| |
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| T |
24982822 |
ttagtcaacccagcgtgccacataaggcgttgctgcatgagggtttaaaatcgaagaatcttgaaattataaaagaaaacctaaaaaaatatattttaca |
24982921 |
T |
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| Q |
257 |
agggataaaccaaaacttgttcaaatgacaggggtaaccatatatt |
302 |
Q |
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| T |
24982922 |
ggggataaaccaaaacttgttcaaatgacaggggtaaccatatatt |
24982967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 24982698 - 24982769
Alignment:
| Q |
33 |
tgatatgcgtttaaatttaatggaaagatttgatatggctgagttttctggaaagatttgatatgcatttga |
104 |
Q |
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| T |
24982698 |
tgatatgcgtttaaatttaatggaaagatttgatatggctgtgttttctggaaagatttgatatgcatttga |
24982769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1548373 - 1548334
Alignment:
| Q |
1 |
caacatcttaaaacttcacaaatcccttcgtctgatatgc |
40 |
Q |
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| T |
1548373 |
caacatcttaaaacttcacaaataccttcgtctgatatgc |
1548334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1552714 - 1552675
Alignment:
| Q |
1 |
caacatcttaaaacttcacaaatcccttcgtctgatatgc |
40 |
Q |
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| T |
1552714 |
caacatcttaaaacttcacaaataccttcgtctgatatgc |
1552675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 25387707 - 25387670
Alignment:
| Q |
189 |
gctgcatgagggtttaaaatcaaagaatcttgaaatta |
226 |
Q |
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| T |
25387707 |
gctgcatgaaggtctaaaatcaaagaatcttgaaatta |
25387670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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