View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2246_high_6 (Length: 365)
Name: NF2246_high_6
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_high_6 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 48698818 - 48698482
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698818 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
48698719 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698718 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
48698619 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698618 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
48698519 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698518 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
48698482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 30947180 - 30946844
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947180 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
30947081 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947080 |
gattttatcattttgctgttgtatgtggatgacatattggtggtaggccccaataaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
30946981 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946980 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
30946881 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946880 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
30946844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 42269223 - 42269559
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269223 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacagcagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
42269322 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269323 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
42269422 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269423 |
atatgaaagacttgggaccagcaaacaagatcttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
42269522 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269523 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
42269559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 2002204 - 2002539
Alignment:
| Q |
14 |
agatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||| |||||||| ||||||| | ||||| |
|
|
| T |
2002204 |
agatgttggtacaagagatttgattctttcatagttagccttggatacaacagacttaattcagaccattgtacatactacaataggtttggtaataatg |
2002303 |
T |
|
| Q |
114 |
attttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcga |
213 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |||| | ||||| |||||||| ||||||||||||||||| |
|
|
| T |
2002304 |
attttatcattttgttgttgtttgtggatgacatgttggtggtaggacccaacaaagatcaagtctaagaattaaaggcacaattggctagggagttcga |
2002403 |
T |
|
| Q |
214 |
tatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaagg |
313 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||| || | |
|
|
| T |
2002404 |
tatgaaggacttggggccagcaaacaagattttagggatgcaaattcatcgagatagaaaagataggaatatttggctttctcaaagaaattatttacga |
2002503 |
T |
|
| Q |
314 |
aaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
2002504 |
aaagttttgcggcacttcaacatgcaagactgtaag |
2002539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 5820272 - 5819936
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820272 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
5820173 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820172 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
5820073 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820072 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
5819973 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819972 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
5819936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 42588269 - 42588604
Alignment:
| Q |
14 |
agatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||| |||||||| ||||||| | ||||| |
|
|
| T |
42588269 |
agatgttggtacaagagatttgattctttcatagttagccttggatacaacagacttaattcagaccattgtacatactacaataggtttggtaataatg |
42588368 |
T |
|
| Q |
114 |
attttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcga |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
42588369 |
attttatcattttgttgttgtatgtggatgacatgttggtggtaggacccaacaaagatcaagtccaagaattaaatgcacaattggctagggagttcga |
42588468 |
T |
|
| Q |
214 |
tatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaagg |
313 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||| || | |
|
|
| T |
42588469 |
tatgaaggacttggggccagcaaacaagattttagggatgcaaattcatcgagatagaaaagataggaatatttggctttctcaaagaaattatttacga |
42588568 |
T |
|
| Q |
314 |
aaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
42588569 |
aaagttntgcggcgcttcaacatgcaagattgtaag |
42588604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 146 - 349
Target Start/End: Original strand, 54544598 - 54544801
Alignment:
| Q |
146 |
atgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcgatatgaaagacttgggaccagcaaacaagattt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54544598 |
atgttggtggtaggccccaacaaagatcgggtctaagaattgaaggcacagttggctagggagttcgatatgaaagacttgggaccagcaaacaagattt |
54544697 |
T |
|
| Q |
246 |
tagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaaggaaagtcttgcgccgcttcaacatgcaagactg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54544698 |
tagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaaggaaagtcttgcgccgcttcaacatgcaagattg |
54544797 |
T |
|
| Q |
346 |
taag |
349 |
Q |
| |
|
|||| |
|
|
| T |
54544798 |
taag |
54544801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 349
Target Start/End: Original strand, 25877805 - 25877955
Alignment:
| Q |
198 |
tggctagggagttcgatatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctca |
297 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
25877805 |
tggctagggagttcgatatgaaggactctgggccagaaaacaagattttaaggatgcaaattcaccgagatagaaaagataggaagattttgctttctca |
25877904 |
T |
|
| Q |
298 |
aaagaattatctaaggaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
|| |||||| || | ||||| || | | ||||||||| |||||||||||| |
|
|
| T |
25877905 |
aacaaattatatacgaaaagtttttctacacttcaacat-caagactgtaag |
25877955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 9441088 - 9440752
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441088 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacagcagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
9440989 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440988 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
9440889 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440888 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
9440789 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440788 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
9440752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 24595487 - 24595152
Alignment:
| Q |
14 |
agatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||| |||||||| ||||||| | ||||| |
|
|
| T |
24595487 |
agatgttggtacaagagatttgattctttcatagttagccttggatacaacagacttaattcagaccattgtacatactacaataggtttggtaataatg |
24595388 |
T |
|
| Q |
114 |
attttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcga |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||| |||||||| |||||| | |
|
|
| T |
24595387 |
attttatcattttgttgttgtatgtggatgacatgttggtggtaggacccaacaaagatcaagtccaagaattaaaggcacaattggctagagagttcaa |
24595288 |
T |
|
| Q |
214 |
tatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaagg |
313 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||| || | |
|
|
| T |
24595287 |
tatgaaggacttggggccagcaaacaagattttagggatgcaaattcatcgagatagaaaagataggaatatttggctttctcaaagaaattatttacga |
24595188 |
T |
|
| Q |
314 |
aaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
24595187 |
aaagttttgcggcgcttcaacatgcaagattgtaag |
24595152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 34355330 - 34355666
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34355330 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggcaat |
34355429 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355430 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagttcgagtccaggaattgaaggcacagttggctagggagttcg |
34355529 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355530 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
34355629 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355630 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
34355666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 41721730 - 41722066
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721730 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacagcagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
41721829 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721830 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
41721929 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41721930 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacatgaagatttggctttctcaaaagaattatctaag |
41722029 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722030 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
41722066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 26977890 - 26977554
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977890 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
26977791 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26977790 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgggtccaagaattgaaggcacagttggctagggagttcg |
26977691 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977690 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
26977591 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26977590 |
gaaagtcttgcgccgcttcaacatgcaagattgtaag |
26977554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 27875706 - 27875370
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27875706 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttaagaccattgaacgtactacaaaaggtttgatggtaat |
27875607 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27875606 |
gattttatcattttgctgttgtatgtggatgacatattggtggtaggccccaaaaaagatcgagtccaagaattgaaggcacagttggctagggagttcg |
27875507 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875506 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
27875407 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875406 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
27875370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 147 - 349
Target Start/End: Complemental strand, 1473327 - 1473125
Alignment:
| Q |
147 |
tgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcgatatgaaagacttgggaccagcaaacaagatttt |
246 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
1473327 |
tgttggtggtaggacccaacaaagatcaagtccaagaattaaaggcacaattggccagggagtttgatatgaaggacttgggtccagcaaacaagatttt |
1473228 |
T |
|
| Q |
247 |
agggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaaggaaagtcttgcgccgcttcaacatgcaagactgt |
346 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||| | | ||||| ||||| | ||||||||||||||||||| |
|
|
| T |
1473227 |
agggatgcaaattcatcgagatagaaaagataggaatatttggctttctcaaagaaattatttccgaaaagttttgcggcacttcaacatgcaagactgt |
1473128 |
T |
|
| Q |
347 |
aag |
349 |
Q |
| |
|
||| |
|
|
| T |
1473127 |
aag |
1473125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 114 - 342
Target Start/End: Original strand, 21964817 - 21965042
Alignment:
| Q |
114 |
attttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcga |
213 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| | ||| || |||||||| || ||||||||||||||||| | |
|
|
| T |
21964817 |
attttatcactttactgttgtatgtggattacatgttggtggtaggccccaacaaagacctagttcatgaattgaatacatagttggctagggagttcaa |
21964916 |
T |
|
| Q |
214 |
tatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaagg |
313 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| |||| | | |||||||||||||||||| |||||||||| || ||||||||| | |||||||| |
|
|
| T |
21964917 |
tatgaaagacttgggactaataaacaagattttagagatgtaca-tcaccgagacagaaaagataggaagatttagc--tctcaaaagcactatctaaga |
21965013 |
T |
|
| Q |
314 |
aaagtcttgcgccgcttcaacatgcaaga |
342 |
Q |
| |
|
||||||||| | ||||| || |||||||| |
|
|
| T |
21965014 |
aaagtcttgtgacgcttaaaaatgcaaga |
21965042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 18148195 - 18148080
Alignment:
| Q |
18 |
gttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaatgattt |
117 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| |||||||||||| ||| | ||| || |||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
18148195 |
gttggtacaagacaattgattctttcataattagtttcgattacaacaaactaatttctcactgttgtacatactacaaaaggttttatggtaatgattt |
18148096 |
T |
|
| Q |
118 |
tatcattttgctgttg |
133 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18148095 |
tatcattttgctgttg |
18148080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 828799 - 829135
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
828799 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatgataat |
828898 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828899 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
828998 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
828999 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaatatttggctttctcaaaagaattatttaag |
829098 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829099 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
829135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 13841907 - 13841579
Alignment:
| Q |
16 |
atgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaatgat |
115 |
Q |
| |
|
|||||| ||||||| |||| ||||||| ||||||||||| ||||||||||||| |||| || |||||||||||||| |||| ||| ||| ||| ||| |
|
|
| T |
13841907 |
atgttgctacaagatatttaattctttgataattagccttcattacaacagactgagtttaggccattgtacgtactgcaaatttttttatgataacgat |
13841808 |
T |
|
| Q |
116 |
tttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcgata |
215 |
Q |
| |
|
|||||||||||| |||||| | |||| ||||| ||||||||||| |||||||||||| ||||| |||||||| || || | |||||||| | |||||||| |
|
|
| T |
13841807 |
tttatcattttgttgttgtgtatggacgacatattggtggtaggacccaacaaagattgagtcgaggaattgcagacaaaattggctagtgtgttcgata |
13841708 |
T |
|
| Q |
216 |
tgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccg-agacagaaaagacaggaagatttggctttctcaaaagaattatctaagga |
314 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| |||||||| | | ||| |||||||| |||||||| ||||||||||| |||||||| ||| |
|
|
| T |
13841707 |
t----gacttgggaccagcaaacaagattttaaggatacaaattcattgtataca-aaaagacaagaagatttacctttctcaaaatgattatctatgga |
13841613 |
T |
|
| Q |
315 |
aagtcttgcgccgcttcaacatgcaagactgtaa |
348 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||| |
|
|
| T |
13841612 |
aagtcttgcgatactttaacatgcaagattgtaa |
13841579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 192 - 349
Target Start/End: Original strand, 28714582 - 28714739
Alignment:
| Q |
192 |
cacagttggctagggagttcgatatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggct |
291 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||||||| || ||||||||| | |
|
|
| T |
28714582 |
cacagttggttagggagttcgatatgaaagacttgggaccaacaaacaagattttagggatgtaaattcactgagatagaaaagatagaaagatttggtt |
28714681 |
T |
|
| Q |
292 |
ttctcaaaagaattatctaaggaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
28714682 |
ttctcaaaagaattgtataaggaaagtcttgcggcacttcaacatgcaagactgtaag |
28714739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 29032 - 28696
Alignment:
| Q |
13 |
cagatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaat |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29032 |
cagatgttggtgcaagagatttgattctttcataattagcctcaattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggcaat |
28933 |
T |
|
| Q |
113 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
28932 |
gattttatcattttgctgttgtatgtggatgacatgttggtggtaggacccaacaaaggtcgagtccgggaattgaaggcacaattggctagggagttcg |
28833 |
T |
|
| Q |
213 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28832 |
atatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaag |
28733 |
T |
|
| Q |
313 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28732 |
gaaagtcttgcgccgcttcaacatgcaagactgtaag |
28696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 7506572 - 7506237
Alignment:
| Q |
14 |
agatgttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtactacaaaaggtttgatggtaatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||| |||||||| ||||||| || ||||| |
|
|
| T |
7506572 |
agatgttggtacaagagatttgattctttcatagttagccttgaatacaacagacttaattcagaccattgtacatactacaataggtttggtgataatg |
7506473 |
T |
|
| Q |
114 |
attttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcga |
213 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||| | ||||||||||||||||| |
|
|
| T |
7506472 |
attttatcattttgttattgtatgtggatgacatgttggtggtaggacccaacaaagatcaagtccaagaattaaaggcataattggctagggagttcga |
7506373 |
T |
|
| Q |
214 |
tatgaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaagg |
313 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||| || | |
|
|
| T |
7506372 |
tatgaagaacttggggtcagcaaacaagattttagggatgcaaattcatcgagatagaaaagataggaatatttggctttctcaaagaaattatttacga |
7506273 |
T |
|
| Q |
314 |
aaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
||| | ||||| ||||||||||||||| |||||||| |
|
|
| T |
7506272 |
aaaattttgcggcgcttcaacatgcaaaactgtaag |
7506237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 2324791 - 2324746
Alignment:
| Q |
304 |
ttatctaaggaaagtcttgcgccgcttcaacatgcaagactgtaag |
349 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2324791 |
ttatctaaggaaagtcttctaacgcttcaacatgcaagactgtaag |
2324746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 117 - 348
Target Start/End: Original strand, 34972958 - 34973189
Alignment:
| Q |
117 |
ttatcattttgctgttgtatgtggatgacatgttggtggtaggccccaacaaagatcgagtccaggaattgaaggcacagttggctagggagttcgatat |
216 |
Q |
| |
|
|||| |||||| | |||||| |||| |||||||||||| |||||||||||||| || ||||| | |||||||||||| |||| |||||| ||| |||| |
|
|
| T |
34972958 |
ttattattttgttattgtatatggacgacatgttggtgttaggccccaacaaatattaggtccaagtattgaaggcacaattggttagggaattcaatat |
34973057 |
T |
|
| Q |
217 |
gaaagacttgggaccagcaaacaagattttagggatgcaaattcaccgagacagaaaagacaggaagatttggctttctcaaaagaattatctaaggaaa |
316 |
Q |
| |
|
|||||||||||||| ||||||| || |||||| |||||||| ||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
34973058 |
gaaagacttgggactagcaaaccaggttttagcgatgcaaactcaccaagacagaaaagacaagaagatttggctttcttaaatgaattatctaaggaaa |
34973157 |
T |
|
| Q |
317 |
gtcttgcgccgcttcaacatgcaagactgtaa |
348 |
Q |
| |
|
||||| || ||||||||||||||||||||| |
|
|
| T |
34973158 |
gtcttacggtacttcaacatgcaagactgtaa |
34973189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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